Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / test.bat

diff --git a/website/archive/binaries/mac/src/fasta34/test.bat b/website/archive/binaries/mac/src/fasta34/test.bat
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+++ b/website/archive/binaries/mac/src/fasta34/test.bat
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+rem ""
+rem "starting fasta34_t - protein on win32"
+rem ""
+fasta34_t -q -m 6 -Z 100000 mgstm1.aa:1-100 q > test_m1.ok2_t.html
+fasta34_t -S -q -z 11 -O test_m1.ok2_t_p25 -s P250 mgstm1.aa:100-218 q
+rem "done"
+rem "starting fastxy34_t"
+fastx34_t -m 9c -S -q mgtt2_x.seq q 1 > test_t2.xk1_t
+fasty34_t -S -q mgtt2_x.seq q > test_t2.yk2_t
+fastx34_t -m 9c -S -q -z 2 mgstm1.esq a > test_m1.xk2_tz2
+fasty34_t -S -q -z 2 mgstm1.esq a > test_m1.yk2_tz2
+rem "done"
+rem "starting fastxy34_t rev"
+fastx34_t -m 9c -q -m 5 mgstm1.rev q > test_m1.xk2r_t
+fasty34_t -q -m 5 -M 200-300 -z 2 mgstm1.rev q > test_m1.yk2r_tz2
+fasty34_t -q -m 5 -z 11 mgstm1.rev q > test_m1.yk2rz11_t
+rem "done"
+rem "starting ssearch34_t"
+ssearch34_t -m 9c -S -z 3 -q mgstm1.aa  q > test_m1.ss_tz3
+ssearch34_t -q -M 200-300 -z 2 -Z 100000 -s P250 mgstm1.aa q > test_m1.ss_t_p25
+rem "starting ssearch34_t"
+ssearch34sse2_t -m 9c -S -z 3 -q mgstm1.aa  q > test_m1.ss_tz3sse2
+ssearch34sse2_t -q -M 200-300 -z 2 -Z 100000 -s P250 mgstm1.aa q > test_m1.ss_t_p25sse2
+rem "done"
+rem "starting prss34"
+prss34_t -q -k 1000 -A mgstm1.aa xurt8c.aa  > test_m1.rss
+prfx34_t -q -k 1000 -A mgstm1.esq xurt8c.aa > test_m1.rfx
+rem "done"
+rem "starting fasta34_t - DNA"
+fasta34_t -S -q -z 2 mgstm1.seq %M 4 > test_m1.ok4_tz2
+fasta34_t -S -q mgstm1.rev %M 4 > test_m1.ok4r_t
+rem "done"
+rem "starting tfastxy34_t"
+tfastx34_t -m 9c -q -i -3 -m 6 mgstm1.aa m > test_m1.tx2_t.html
+tfasty34_t -q -i -3 -N 5000 mgstm1.aa m > test_m1.ty2_t
+rem "done"
+rem "starting fastf34_t"
+fastf34_t -q m1r.aa q > test_mf.ff_t
+fastf34 -q m1r.aa q > test_mf.ff_s
+rem "done"
+rem "starting tfastf34_t"
+tfastf34_t -q m1r.aa %m > test_mf.tf_tr
+rem "done"
+rem "starting fasts34_t"
+fasts34_t -q -V '*?@' ngts.aa q > test_m1.fs1_t
+fasts34_t -q ngt.aa q > test_m1.fs_t
+fasts34_t -q -n mgstm1.nts m > test_m1.nfs_t
+rem "done"
+rem "starting tfasts34_t"
+tfasts34_t -q n0.aa %m > test_m1.ts_r
+rem "done"
+rem "starting fasta34 - protein"
+fasta34 -q -z 2 mgstm1.aa q 1 > test_m1.ok1z2
+fasta34 -q -s P250 mgstm1.aa q > test_m1.ok2_p25 
+rem "done"
+rem "starting fastx3"
+fastx34 -m 9c -q mgstm1.esq q > test_m1.ok2x 
+rem "done"
+rem "starting fasty3"
+fasty34 -q mgstm1.esq q > test_m1.ok2y 
+rem "done"
+rem "starting fasta34 - DNA "
+fasta34 -m 9c -q mgstm1.seq M 4 > test_m1.ok4 
+rem "done"
+rem "starting ssearch3"
+ssearch34 -S -q -z 2 mgstm1.aa a > test_m1.ss_z2
+ssearch34 -q -s P250 mgstm1.aa a > test_m1.ss_p25 
+ssearch34 -S -q -s BL50  mgstm1.aa a > test_m1.ss_bl50
+ssearch34 -S -q -s blosum50.mat mgstm1.aa a > test_m1.ss_bl50f
+ssearch34sse2 -S -q -z 2 mgstm1.aa q > test_m1.ss_z2_sse2
+ssearch34sse2 -q -s P250 mgstm1.aa q > test_m1.ss_p25_sse2 
+rem "done"
+rem "starting tfastxy3"
+tfastx34 -q mgstm1.aa M > test_m1.tx2 
+tfasty34 -m 9c -q mgstm1.aa M > test_m1.ty2 
+rem "done"
+rem "starting fasts34"
+fasts34 -q -V '@?*' ngts.aa q > test_m1.fs1
+fasts34 -q ngt.aa q > test_m1.fs
+rem "done"