Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / fasta34 / test_s.sh

diff --git a/website/archive/binaries/mac/src/fasta34/test_s.sh b/website/archive/binaries/mac/src/fasta34/test_s.sh
new file mode 100644 (file)
index 0000000..14cce8b
--- /dev/null
+++ b/website/archive/binaries/mac/src/fasta34/test_s.sh
@@ -0,0 +1,47 @@
+#!/bin/csh -f
+echo ""
+echo "starting fasta34 - protein" `date` "on" `hostname`
+echo `uname -a`
+echo ""
+fasta34 -q -m 6 -Z 100000 mgstm1.aa:1-100 q > test_m1.ok2.html
+fasta34 -S -q -z 11 -O test_m1.ok2_p25 -s P250 mgstm1.aa:100-218 q
+echo "done"
+echo "starting fastxy34" `date`
+fastx34 -m 9 -S -q mgtt2_x.seq q > test_t2.xk2
+fasty34 -S -q mgtt2_x.seq q > test_t2.yk2
+fastx34 -m 9 -S -q -z 2 mgstm1.esq a > test_m1.xk2z2
+fasty34 -S -q -z 2 mgstm1.esq a > test_m1.yk2z2
+echo "done"
+echo "starting fastxy34 rev" `date`
+fastx34 -m 9 -q -m 5 mgstm1.rev q > test_m1.xk2r
+fasty34 -q -m 5 -M 200-300 -z 2 mgstm1.rev q > test_m1.yk2rz2
+fasty34 -q -m 5 -z 11 mgstm1.rev q > test_m1.yk2rz11
+echo "done"
+echo "starting ssearch34" `date`
+ssearch34 -m 9 -S -z 3 -q mgstm1.aa  q > test_m1.ssz3
+ssearch34 -q -M 200-300 -z 2 -Z 100000 -s P250 mgstm1.aa q > test_m1.ss_p25
+echo "done"
+echo "starting fasta34 - DNA" `date`
+fasta34 -q -z 2 mgstm1.seq %RMB 4 > test_m1.ok4z2
+fasta34 -q mgstm1.rev %RMB 4 > test_m1.ok4r
+echo "done"
+echo "starting tfasta34" `date`
+tfasta34 -q mgstm1.aa %RMB > test_m1.tk2
+echo "done"
+echo "starting tfastxy34" `date`
+tfastx34 -m 9 -q -i -3 -m 6 mgstm1.aa %p > test_m1.tx2.html
+tfasty34 -q -i -3 -N 5000 mgstm1.aa %p > test_m1.ty2
+echo "done"
+echo "starting fastf34" `date`
+fastf34 -q m1r.aa q > test_mf.ff_s
+echo "done"
+echo "starting tfastf34" `date`
+tfastf34 -q -E 0.0001 m1r.aa %r > test_mf.tf_r
+echo "done"
+echo "starting fasts34" `date`
+fasts34 -q n0.aa q > test_m1.fs_s
+echo "done"
+echo "starting tfasts34" `date`
+tfasts34 -q n0.aa %r > test_m1.ts_r
+echo "done"
+echo "done" `date`