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[jabaws.git] / website / archive / binaries / mac / src / globplot / README

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-Quick install:
-
--install python2.2+
--install Biopython from www.biopython.org
-
--download TISEAN source: http://www.mpipks-dresden.mpg.de/~tisean/archive.html#source
--compile the TISEAN package and get the sav_gol binary from the TISEAN_2.1/source_c directory,
-move it to the same directory as this archive was extracted to or change the path in
-the SavitzkyGolay routine.
-
-run globplot: ./GlobPlot.py
-
-
-note: only Russell/Linding propensities are currently in the script,
-you can replace them manually or mail and ask me to do it...but these
-parameters are the ones we had best results with!
-
-
-input: sequence_file is a fasta or file with multiple fasta sequences in!
-output: note that the masking is OPPOSITE the one the www servers is giving,
-CAPITAL letters means GlobDom or disorder!
-
-
-
-
-cheers
-r.
-
-GlobPlot & GlobPipe
-Rune Linding
-Copyright (C) 2003
-email: linding@embl.de