Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / globplot / biopython-1.50 / Bio / Transcribe.py

diff --git a/website/archive/binaries/mac/src/globplot/biopython-1.50/Bio/Transcribe.py b/website/archive/binaries/mac/src/globplot/biopython-1.50/Bio/Transcribe.py
deleted file mode 100644 (file)
index 9cc0b48..0000000
--- a/website/archive/binaries/mac/src/globplot/biopython-1.50/Bio/Transcribe.py
+++ /dev/null
@@ -1,34 +0,0 @@
-"""Code to transcribe DNA into RNA or back (OBSOLETE).
-
-You are now encouraged to use the Seq object methods or the functions
-in Bio.Seq instead.
-
-This module is now considered to be obsolete, and is likely to be deprecated
-in a future release of Biopython, and later removed.
-"""
-
-from Bio import Alphabet, Seq
-from Bio.Alphabet import IUPAC
-
-class Transcribe:
-    def __init__(self, dna_alphabet, rna_alphabet):
-        self.dna_alphabet = dna_alphabet
-        self.rna_alphabet = rna_alphabet
-        
-    def transcribe(self, dna):
-        assert dna.alphabet == self.dna_alphabet, \
-               "transcribe has the wrong DNA alphabet"
-        s = dna.data
-        return Seq.Seq(s.replace("T", "U"), self.rna_alphabet)
-    def back_transcribe(self, rna):
-        assert rna.alphabet == self.rna_alphabet, \
-               "back transcribe has the wrong RNA alphabet"
-        s = rna.data
-        return Seq.Seq(s.replace("U", "T"), self.dna_alphabet)
-
-generic_transcriber = Transcribe(Alphabet.generic_dna,
-                                 Alphabet.generic_rna)
-ambiguous_transcriber = Transcribe(IUPAC.ambiguous_dna,
-                                   IUPAC.ambiguous_rna)
-unambiguous_transcriber = Transcribe(IUPAC.unambiguous_dna,
-                                     IUPAC.unambiguous_rna)