+++ /dev/null
-"""Part of an old unused and undocumented sequence writing framework (DEPRECATED)."""
-from Bio import Writer
-
-class WriteFasta(Writer.Writer):
- def __init__(self, outfile, seqwidth = 72):
- Writer.Writer.__init__(self, outfile)
- assert seqwidth > 0, seqwidth
- self.seqwidth = seqwidth
-
- def write(self, record):
- self.outfile.write(">%s %s\n" % (record.id, record.description))
- seq = record.seq
- assert seq.alphabet.size == 1, "cannot handle alphabet of size %d" % \
- seq.alphabet.size
- seq = seq.data
- seqwidth = self.seqwidth
- for i in range(0, len(seq), seqwidth):
- self.outfile.write(seq[i:i+seqwidth])
- self.outfile.write("\n")
-
-make_writer = WriteFasta