Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / mafft / core / defs.c

diff --git a/website/archive/binaries/mac/src/mafft/core/defs.c b/website/archive/binaries/mac/src/mafft/core/defs.c
deleted file mode 100644 (file)
index 4136bc3..0000000
--- a/website/archive/binaries/mac/src/mafft/core/defs.c
+++ /dev/null
@@ -1,108 +0,0 @@
-#include <stdio.h>
-#include "dp.h"
-#include "mltaln.h"
-
-int TLS commonAlloc1 = 0;
-int TLS commonAlloc2 = 0;
-int TLS **commonIP = NULL;
-int TLS **commonJP = NULL;
-int nthread = 1;
-int randomseed = 0;
-int parallelizationstrategy = BAATARI1;
-
-
-char modelname[100];
-int njob, nlenmax;
-int amino_n[0x80];
-char amino_grp[0x80];
-int amino_dis[0x80][0x80];
-int amino_disLN[0x80][0x80];
-double amino_dis_consweight_multi[0x80][0x80];
-int n_dis[26][26];
-int n_disFFT[26][26];
-float n_dis_consweight_multi[26][26];
-char amino[26];
-double polarity[20];
-double volume[20];
-int ribosumdis[37][37];
-
-int ppid;
-double thrinter;
-double fastathreshold;
-int pslocal, ppslocal;
-int constraint;
-int divpairscore;
-int fmodel; // 1-> fmodel 0->default -1->raw
-int nblosum; // 45, 50, 62, 80
-int kobetsubunkatsu;
-int bunkatsu;
-int dorp;
-int niter;
-int contin;
-int calledByXced;
-int devide;
-int scmtd;
-int weight;
-int utree;
-int tbutree;
-int refine;
-int check;
-double cut;
-int cooling;
-int penalty, ppenalty, penaltyLN;
-int RNApenalty, RNAppenalty;
-int RNApenalty_ex, RNAppenalty_ex;
-int penalty_ex, ppenalty_ex, penalty_exLN;
-int penalty_EX, ppenalty_EX;
-int penalty_OP, ppenalty_OP;
-int RNAthr, RNApthr;
-int offset, poffset, offsetLN, offsetFFT;
-int scoremtx;
-int TMorJTT;
-char use_fft;
-char force_fft;
-int nevermemsave;
-int fftscore;
-int fftWinSize;
-int fftThreshold;
-int fftRepeatStop;
-int fftNoAnchStop;
-int divWinSize;
-int divThreshold;
-int disp;
-int outgap = 1;
-char alg;
-int cnst;
-int mix;
-int tbitr;
-int tbweight;
-int tbrweight;
-int disopt;
-int pamN;
-int checkC;
-float geta2;
-int treemethod;
-int kimuraR;
-char *swopt;
-int fftkeika;
-int score_check;
-int makedistmtx;
-char *inputfile;
-char *addfile;
-int addprofile = 1;
-int rnakozo;
-char rnaprediction;
-int scoreout = 0;
-int outnumber = 0;
-
-char *signalSM;
-FILE *prep_g;
-FILE *trap_g;
-char **seq_g;
-char **res_g;
-
-float consweight_multi = 1.0;
-float consweight_rna = 0.0;
-char RNAscoremtx = 'n';
-
-char *newgapstr = "-";