git://source.jalview.org / jabaws.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
Delete unneeded directory
[jabaws.git] / website / archive / binaries / mac / src / mafft / test / sample.gins1
diff --git a/website/archive/binaries/mac/src/mafft/test/sample.gins1 b/website/archive/binaries/mac/src/mafft/test/sample.gins1
deleted file mode 100644 (file)
index 3901982..0000000
--- a/website/archive/binaries/mac/src/mafft/test/sample.gins1
+++ /dev/null
@@ -1,468 +0,0 @@
->     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
---------------------MNGTE--GDNFYVPFSNKTG--LARSP-------------
--------------------------------YEYPQY-YLAEPW----------------
-------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLF
-G-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN
-F-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQCSCGPDYYTLNPN
-FNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT--HQGSD-FGATFMTLPAF
-FAKSSALYNPVIYILMNKQFRNCMITTL-----CCGKNPLGDDE-SG-ASTSKTEVSSVS
-T-----------------------------------------------------------
------------------------------------SPV-------SP-A
->     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
---------------------MNGTE--GPNFYVPFSNITG--VVRSP-------------
--------------------------------FEQPQY-YLAEPW----------------
-------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG
-G-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN
-F-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQCSCGIDYYTLKPE
-VNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA----------------
-------------------------------------------------------------
-------------------------------------------------------------
------TTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT--HQGSN-FGPIFMTLPAF
-FAKTASIYNPIIYIMMNKQFRNCMLTSL-----CCGKNPLGDDE-AS-ATASKTE-----
-T-----------------------------------------------------------
------------------------------------SQV-------AP-A
->     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
---------------------MNGTE--GINFYVPMSNKTG--VVRSP-------------
--------------------------------FEYPQY-YLAEPW----------------
-------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACF
-G-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN
-F-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQCSCGPDYYTHNPD
-YHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA----------------
-------------------------------------------------------------
-------------------------------------------------------------
------TTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT--NKGAD-FTATLMAVPAF
-FSKSSSLYNPIIYVLMNKQFRNCMITTI-----CCGKNPFGDEDVSSTVSQSKTEVSSVS
-S-----------------------------------------------------------
------------------------------------SQV-------SP-A
->     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
---------------------MNGTE--GKNFYVPMSNRTG--LVRSP-------------
--------------------------------FEYPQY-YLAEPW----------------
-------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCF
-G-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS
-F-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQCSCGPDYYTLNPD
-YNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF--NKGAD-FSAKFMAIPAF
-FSKSSALYNPVIYVLLNKQFRNCMLTTI-----FCGKNPLGDDE-SSTVSTSKTEVSS--
-------------------------------------------------------------
--------------------------------------V-------SP-A
->     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
---------------------MNGTE--GNNFYVPLSNRTG--LVRSP-------------
--------------------------------FEYPQY-YLAEPW----------------
-------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCF
-G-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS
-F-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQCSCGPDYYTLNPE
-YNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF--NKGAA-FSAQFMAIPAF
-FSKTSALYNPVIYVLLNKQFRSCMLTTL-----FCGKNPLGDEE-SSTVSTSKTEVSS--
-------------------------------------------------------------
--------------------------------------V-------SP-A
->     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
---------------------MKQVPEFHEDFYIPIPLDINNLSAYSP-------------
--------------------------------FLVPQD-HLGNQG----------------
-------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIF
-G-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN
-F-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQCSCGPDWYTTNNK
-YNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS--HRGEE-FDLRMATIPSC
-LSKASTVYNPVIYVLMNKQFRSCMM-KM-----VCGKN-IEEDE-AS-TSSQVTQVSS--
-------------------------------------------------------------
--------------------------------------V-------APEK
->     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
---------------------MRKMS--EEEFYL-FKNISS----VGP-------------
--------------------------------WDGPQY-HIAPVW----------------
-------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIF
-S-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN
-F-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQCSCGPDWYTVGTK
-YRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA----------------
-------------------------------------------------------------
-------------------------------------------------------------
------TTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN--NRNHG-LDLRLVTIPSF
-FSKSACIYNPIIYCFMNKQFQACIM-KM-----VCGKA-MTDES-DT-CSSQKTEVSTVS
-S-----------------------------------------------------------
------------------------------------TQV-------GP-N
->     8=opsin, greensensitive  human (fragment) S07060
-------------------------------------------------------------
-------------------------------------------------------------
------------------------------------------------------DLAETVI
-A-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN
-V-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCGPDVFSGSSY
-PGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEKEVTRMVVVMVLAFC----------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------------------------------------------
->     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
-MAQQWS-LQRLAGRHPQDSYEDSTQ--SSIFTYTNSNST-----RGP-------------
--------------------------------FEGPNY-HIAPRW----------------
-------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVI
-A-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN
-V-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCGPDVFSGSSY
-PGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA--NPGYP-FHPLMAALPAF
-FAKSATIYNPVIYVFMNRQFRNCILQLF-------GKKVDDGSE-LS--SASKTEVSSV-
-------------------------------------------------------------
------------------------------------SSV-------SP-A
->    10== Z68193   1 human Red Opsin <>[]
-MAQQWS-LQRLAGRHPQDSYEDSTQ--SSIFTYTNSNST-----RGP-------------
--------------------------------FEGPNY-HIAPRW----------------
-------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVI
-A-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN
-V-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLKTSCGPDVFSGSSY
-PGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA--NPGYA-FHPLMAALPAY
-FAKSATIYNPVIYVFMNRQFRNCILQLF-------GKKVDDGSE-LS--SASKTEVSSV-
-------------------------------------------------------------
------------------------------------SSV-------SP-A
->    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
-MTEAWNVAVFAARRSRDD--DDTTR--GSVFTYTNTNNT-----RGP-------------
--------------------------------FEGPNY-HIAPRW----------------
-------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLV
-A-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN
-I-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLKTSCGPDVFSGSVE
-LGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA--NPGYA-FHPLAAALPAY
-FAKSATIYNPVIYVFMNRQFRNCIMQLF-------GKKVDDGSE-AS--TTSRTEVSSVS
-N-----------------------------------------------------------
------------------------------------SSV-------AP-A
->    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
-MA-AWE-AAFAARRRHEE--EDTTR--DSVFTYTNSNNT-----RGP-------------
--------------------------------FEGPNY-HIAPRW----------------
-------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVI
-A-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN
-I-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLKTSCGPDVFSGSSD
-PGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE----------------
-------------------------------------------------------------
-------------------------------------------------------------
------STQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA--NPGYA-FHPLAAALPAY
-FAKSATIYNPIIYVFMNRQFRNCILQLF-------GKKVDDGSE-VS--T-SRTEVSSVS
-N-----------------------------------------------------------
------------------------------------SSV-------SP-A
->    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
-------------------------M--SSNSSQAPPNGT-----PGP-------------
--------------------------------FDGPQWPYQAPQS----------------
-------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLC
-G-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD
-F-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLRTSCGPNWYTGGSN
---NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD----------------
-------------------------------------------------------------
-------------------------------------------------------------
------TTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT--HKGII-IQPVLASLPSY
-FSKTATVYNPIIYVFMNKQFQSCLLEML-----CCGYQPQRTGK-AS--PGTPGPHADVT
-A-----------------------------------------------------------
------------------------------------AGLRNKVMPAHP-V
->    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
-MESGNVSSSLFGNVSTALRPE----ARLSA---E---TRLLGWNVPP-------------
--------------------------------EELR---HIPEHWLTYPE-----------
---PPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK
---TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG
---KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYLTSCTFDYLTDN--
-FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-SNVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF--GDKTL-LTPGATMIPAC
-ACKMVACIDPFVYAISHPRYRMELQKRCPWL--ALNEKAPESSA----VASTST---TQE
-P-----------------------------------------------------------
------------------------------------QQT-------TA-A
->    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
-MEYHNVSSVL-GNVSSVLRPD----ARLSA---E---SRLLGWNVPP-------------
--------------------------------DELR---HIPEHWLIYPE-----------
---PPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK
---TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG
---KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYLTSCTFDYLTDN--
-FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDSLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-SNVDKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF--GDKTL-LTPGATMIPAC
-TCKMVACIDPFVYAISHPRYRMELQKRCPWL--AISEKAPESRA----AISTST---TQE
-Q-----------------------------------------------------------
------------------------------------QQT-------TA-A
->    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
-ME------PLCNASEPPLRPE----AR-SSGNGD---LQFLGWNVPP-------------
--------------------------------DQIQ---YIPEHWLTQLE-----------
---PPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK
---APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR
---NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--
-FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-SNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSL-LTQGATMIPAC
-TCKLVACIDPFVYAISHPRYRLELQKRCPWL--GVNEKSGEISS----AQSTTT---QEQ
-------------------------------------------------------------
------------------------------------QQT-------TA-A
->    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
-MD------ALCNASEPPLRPE----ARMSSGSDE---LQFLGWNVPP-------------
--------------------------------DQIQ---YIPEHWLTQLE-----------
---PPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK
---APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR
---NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCSFDYLSDN--
-FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVESLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-SNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSL-LTPGATMIPAC
-TCKLVACIEPFVYAISHPRYRMELQKRCPWL--GVNEKSGEASS----AQSTTT---QEQ
-T-----------------------------------------------------------
------------------------------------QQT-------SA-A
->    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
-MT-----------NATGPQMAYYGAASMDFGYPE---GVSIVDFVRP-------------
--------------------------------EIKP---YVHQHWYNYPP-----------
---VNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTT
-N-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG
-P-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGILDSCSYDYLTQD--
-FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVSTLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-NEADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM--GDTSG-ITPLVSTLPAL
-LAKSCSCYNPFVYAISHPKYRLAITQHLPWF--CVHETETKSND----DSQSNS---TVA
-Q-----------------------------------------------------------
----------------------------------------------DK-A
->    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
-MA-----------NVTGPQMAFYGSGAATFGYPE---GMTVADFVPD-------------
--------------------------------RVKH---MVLDHWYNYPP-----------
---VNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTT
-N-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG
-P-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGILDSCSYDYFTRD--
-MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTNLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-NEAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL--GNAEG-ITPLLTTLPAL
-LAKSCSCYNPFVYAISHPKFRLAITQHLPWF--CVHEKDPNDVE----ENQSSN---TQT
-Q-----------------------------------------------------------
----------------------------------------------EK-S
->    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
-ME-----SFAVAAAQLGPHFA-----PLS--------NGSVVDKVTP-------------
--------------------------------DMAH---LISPYWNQFPA-----------
---MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMIT
-N-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG
-R-PMTIPLALGKM---------------------------YVPEGNLTSCGIDYLERD--
-WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EG-LTPLNTIWGAC
-FAKSAACYNPIVYGISHPKYRLALKEKCPCC--VFGKVDDGKSS----DAQSQA-TASEA
-E-----------------------------------------------------------
----------------------------------------------SK-A
->    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
-ME-----SFAVAAAQLGPHFA-----PLS--------NGSVVDKVTP-------------
--------------------------------DMAH---LISPYWNQFPA-----------
---MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMIT
-N-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG
-R-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNLTSCGIDYLERD--
-WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-SEDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EG-LTPLNTIWGAC
-FAKSAACYNPIVYGISHPKYRLALKEKCPCC--VFGKVDDGKSS----DAQSQA-TASEA
-E-----------------------------------------------------------
----------------------------------------------SK-A
->    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
-MD-----SFAAVATQLGPQFA-----APS--------NGSVVDKVTP-------------
--------------------------------DMAH---LISPYWDQFPA-----------
---MDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMIT
-N-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG
-R-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNLTSCGIDYLERD--
-WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-SEDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF--KF-EG-LTPLNTIWGAC
-FAKSAACYNPIVYGISHPKYRLALKEKCPCC--VFGKVDDGKSS----EAQSQA-TTSEA
-E-----------------------------------------------------------
----------------------------------------------SK-A
->    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
-MERSHLPETPFDLAHSGPRFQ-----AQSSG------NGSVLDNVLP-------------
--------------------------------DMAH---LVNPYWSRFAP-----------
---MDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMAS
-Q-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING
-T-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNLTACSIDYMTRM--
-WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-SEDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF--KI-DG-LTPLTTIWGAT
-FAKTSAVYNPIVYGISHPKYRIVLKEKCPMC--VFGNTDEPKPD----APASDTETTSEA
-D-----------------------------------------------------------
----------------------------------------------SK-A
->    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
-MERSLLPEPPLAMALLGPRFE-----AQTGG------NRSVLDNVLP-------------
--------------------------------DMAP---LVNPHWSRFAP-----------
---MDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMAS
-Q-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING
-T-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNLTACSIDYMTRQ--
-WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKSLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-SEDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF--KI-DG-LTPLTTIWGAT
-FAKTSAVYNPIVYGISHPNDRLVLKEKCPMC--VCGTTDEPKPD----APPSDTETTSEA
-E-----------------------------------------------------------
----------------------------------------------SK-D
->    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
-MI-----------AVSGPSYE-----AFSYGGQARFNNQTVVDKVPP-------------
--------------------------------DMLH---LIDANWYQYPP-----------
---LNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFC
-M-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG
-K-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNMTACGTDYFNRG--
-LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-S-SENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF--NL-VK-ISPLFTIWGSL
-FAKANAVYNPIVYGISHPKYRAALFAKFPSL--AC-AAEPSSDA----VSTTSG-TTTVT
-D-----------------------------------------------------------
-----------------------------------NEK--------SN-A
->    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
-M-------------ANQLSYS-----SLGWPYQP---NASVVDTMPK-------------
--------------------------------EMLY---MIHEHWYAFPP-----------
---MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAF
-M-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA
-A-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNLTSCTVDYLTKD--
-WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVASLR-------
-------------------------------------------------------------
-------------------------------------------------------------
-ANADQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF--SSGTR-LTPLATIWGSV
-FAKANSCYNPIVYGISHPRYKAALYQRFPSL--ACGSGESGSDV----KSEASA-TTTME
-E-----------------------------------------------------------
-----------------------------------KPKI-------PE-A
->    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
-MV-------------ESTTLV-----NQTWWY-----NPTV-------------------
---------------------------------------DIHPHWAKFDP-----------
---IPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAI
-NGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAA
-SKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGILTSCSFDYLSTD--
-PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKELR-------
-------------------------------------------------------------
-------------------------------------------------------------
-K-AQ-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF--GPAEW-VTPYAAELPVL
-FAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKECED----ANDAEEEVVASE
-R--GGESRDAAQMKEMMAMMQKMQAQQAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYP
-PQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQA-------YQ-A
->    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
-MG-------------RDLR-D-----NETWWY-----NPSI-------------------
---------------------------------------VVHPHWREFDQ-----------
---VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLV
-NGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAA
-SKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVLCNCSFDYISRD--
-STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELR-------
-------------------------------------------------------------
-------------------------------------------------------------
-K-AQ-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF--GPLEW-VTPYAAQLPVM
-FAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETED----DKDAETEIPAGE
-SSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYP
-PQGYPP---PPQGAPPQGAPP------AAPPQGVDNQA-------YQ-A
->    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
-MMDVNSSGRPDLYGHLRSFLLPEVGRGLPDLSPDG-----------------GADPVAGS
-WAPHLLS------------------------EVTAS---PAPTW---DAPPDNASGCGEQ
-INYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVA
-V-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTY
-PVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLISQDF------
-----GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------PGFP
-RVEPDSVIALNG------------------------------------------------
-----IVKLQKE------------------VEECAN------------------LSRLLKH
-ERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTFLW
-LGYANSLINPFIYAFFNRDLRTTYRSLLQCQYRNINRKLSAAGMHEALKLAERPERPEFV
-L-----------------------------------------------------------
------------------------------------QNADYCRKKGHD-S
->    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
-------------------------------------------------------------
--MPHLLSGFL---------------------EVTAS---PAPTW---DAPPDNVSGCGEQ
-INYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVA
-V-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTY
-PVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLISQDF------
-----GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------PGFP
-RVQPESVISLNG------------------------------------------------
-----VVKLQKE------------------VEECAN------------------LSRLLKH
-ERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLW
-LGYANSLINPFIYAFFNRDLRPTSRSLLQCQYRNINRKLSAAGMHEALKLAERPERSEFV
-L-----------------------------------------------------------
------------------------------------QNSDHCGKKGHD-T
->    31=p A47425 serotonin receptor 5HT-7 - rat
-------------------------------------------------------------
--MPHLLSGFL---------------------EVTAS---PAPTW---DAPPDNVSGCGEQ
-INYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVA
-V-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTY
-PVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLISQDF------
-----GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------PGFP
-RVQPESVISLNG------------------------------------------------
-----VVKLQKE------------------VEECAN------------------LSRLLKH
-ERKNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVERTCLW
-LGYANSLINPFIYAFFNRDLRTTYRSLLQCQYRNINRKLSAAGMHEALKLAERPERSEFV
-L-----------------------------------------------------------
------------------------------------QNSDHCGKKGHD-T
->    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
-MDVLSPG-----------------------------------------------------
---------------------QGNNT------TSPPAPFETGGNTTGISD-----------
---VTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVL
-V-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDY
-VNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH------
-----GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQ
-PKK-----SVNG--ESGSRNWRLGVESKAGGALCANGAVRQGDDGAAL--EVIEVHRVGN
-SKEHLPLPSEAGPTPCAPAS------------------FERKNERNA-------------
-EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCH-MPTLLGAIINW
-LGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKF----------------------------
-------------------------------------------------------------
--------------------------------------------CR---Q
->    33=p A35181 serotonin receptor class 1A - rat
-MDVFSFG-----------------------------------------------------
---------------------QGNNT------TASQEPFGTGGNVTSISD-----------
---VTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVL
-V-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDY
-VNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH------
-----GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSSAPP
-PKK-----SLNG--QPGSGDWRRCAENRAVGTPCTNGAVRQGDDEATL--EVIEVHRVGN
-SKEHLPLPSESGSNSYAPAC------------------LERKNERNA-------------
-EAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCH-MPALLGAIINW
-LGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKF----------------------------
-------------------------------------------------------------
--------------------------------------------CR---R
->    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
-MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS
-HSSRSRD-----------NASANDT------SATNM---TDDRYWSLTV-----------
---YSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVL
-V-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDY
-IRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDPNN--DPDKTGTCIISQDK------
-----GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASP
-KTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSS
-SSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSNDTPYS-------------
-RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFARSFVLW
-LGYFNSLLNPIIYTIFSPEFRSAFQKILFGKY----------------------------
-------------------------------------------------------------
--------------------------------------------RRGH-R
->    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
-MANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLVTSDFNDSYGLTGQFINGS
-HSSRSRD-----------NASANDT------SATNM---TDDRYWSLTV-----------
---YSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVL
-V-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDY
-IRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDPNN--DPDKTGTCIISQDK------
-----GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASP
-KTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSS
-SSERLKQIQIETAEAFANGCAEEASIAMLERQCNNGKKISSNDTPYS-------------
-RTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF-VDPE-G-IPPFARSFVLW
-LGYFNSLLNPIIYTIFSPEFRSAFQKILFGKY----------------------------
-------------------------------------------------------------
--------------------------------------------RRGH-R
->    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
-M--------------------------------------------------------EGA
-EGQEELDWEALYLRLPLQNCSWNSTGWEPNWNVTVV---PNTTWWQASAPFDTP------
---AALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACL
-V-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDY
-IHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV------
-----GYQIFATASSFYVPVLIILILYWRIYQTARKRIRR------RRGATARGGVGPPPV
-PAG---------------------------------GALVAGGGSGGIAAAVVAV-----
-IGRPLPTISETTTTGFTNVSSNNTSPE--KQSCANGLEADPPTTGYGAVAAAYYPSLVRR
-KPKEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-CD--CE-VSPVLTSLSLW
-LGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRR----------------------------
-------------------------------------------------------------
-----------------------------------------VRRRRAP-Q