Delete unneeded directory
[jabaws.git] / website / archive / binaries / mac / src / mafft / test / sample.parttree
diff --git a/website/archive/binaries/mac/src/mafft/test/sample.parttree b/website/archive/binaries/mac/src/mafft/test/sample.parttree
deleted file mode 100644 (file)
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+++ /dev/null
@@ -1,540 +0,0 @@
->     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
-M-----------------------------------------------------------
-------------------------------NGTE--GDNFYV----PF------------
---------------------------SNKTGLARSPYEYPQY-YLA-----EPWK-----
-----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F
-TVTMYTS-MN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-F
-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFN
-NESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SASTQKAEKEVTRMV
-VLMVIGFLVCWVPYASVAFYIFT-HQG-S--DFGATFMTLPAFFAKSSALYNPVIYILMN
-KQFRNCMITTLC-C---GKNP------------------------------LGDDE--SG
-ASTSKT-E--VSSVS-TSPV----------------------------------------
----------------------------------------------SP-A---
->     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
-M-----------------------------------------------------------
-------------------------------NGTE--GPNFYV----PF------------
---------------------------SNITGVVRSPFEQPQY-YLA-----EPWQ-----
-----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F
-TTTLYTS-LH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-F
-RFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVN
-NESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SATTQKAEKEVTRMV
-IIMVIFFLICWLPYASVAMYIFT-HQG-S--NFGPIFMTLPAFFAKTASIYNPIIYIMMN
-KQFRNCMLTSLC-C---GKNP------------------------------LGDDE--AS
-ATASKT-E--------TSQV----------------------------------------
----------------------------------------------AP-A---
->     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
-M-----------------------------------------------------------
-------------------------------NGTE--GINFYV----PM------------
---------------------------SNKTGVVRSPFEYPQY-YLA-----EPWK-----
-----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F
-TVTFYTA-WN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-F
-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYH
-NESYVLYMFVIHFIIPVVVIFFSYGRLICKV----REAAAQQQE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SATTQKAEKEVTRMV
-ILMVLGFMLAWTPYAVVAFWIFT-NKG-A--DFTATLMAVPAFFSKSSSLYNPIIYVLMN
-KQFRNCMITTIC-C---GKNP------------------------------FGDEDVSST
-VSQSKT-E--VSSVS-SSQV----------------------------------------
----------------------------------------------SP-A---
->     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
-M-----------------------------------------------------------
-------------------------------NGTE--GKNFYV----PM------------
---------------------------SNRTGLVRSPFEYPQY-YLA-----EPWQ-----
-----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F
-TVTFYTA-IN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-F
-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYN
-NESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KAAAAQQQD----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SASTQKAEREVTKMV
-ILMVFGFLIAWTPYATVAAWIFF-NKG-A--DFSAKFMAIPAFFSKSSALYNPVIYVLLN
-KQFRNCMLTTIF-C---GKNP------------------------------LGDDE-SST
-VSTSKT-E--VSS------V----------------------------------------
----------------------------------------------SP-A---
->     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
-M-----------------------------------------------------------
-------------------------------NGTE--GNNFYV----PL------------
---------------------------SNRTGLVRSPFEYPQY-YLA-----EPWQ-----
-----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F
-TVTFYTA-IN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-F
-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYN
-NESYVLYMFICHFILPVTIIFFTYGRLVCTV----KAAAAQQQD----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SASTQKAEREVTKMV
-ILMVLGFLVAWTPYATVAAWIFF-NKG-A--AFSAQFMAIPAFFSKTSALYNPVIYVLLN
-KQFRSCMLTTLF-C---GKNP------------------------------LGDEE-SST
-VSTSKT-E--VSS------V----------------------------------------
----------------------------------------------SP-A---
->     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
-M-----------------------------------------------------------
-------------------------------KQVPEFHEDFYI----PIPL----------
-------------------------DINNLS--AYSPFLVPQD-HLG-----NQGI-----
-----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S
-PLSFYSF-FN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-F
-TFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYN
-NESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KLAAKAQAD----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SASTQKAEREVTKMV
-VVMVLGFLVCWAPYASFSLWIVS-HRG-E--EFDLRMATIPSCLSKASTVYNPVIYVLMN
-KQFRSCMM-KMV-C---GKN-------------------------------IEEDE--AS
-TSSQVT-Q--VSS------V----------------------------------------
----------------------------------------------APEK---
->     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
-M-----------------------------------------------------------
-------------------------------RKMS--EEEFYL-------F----------
---------------------------KNISSV--GPWDGPQY-HIA-----PVWA-----
-----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V
-FPVFVAS-CN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-F
-RFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYR
-SESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KAVAAQQQE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SATTQKAEREVSRMV
-VVMVGSFCVCYVPYAAFAMYMVN-NRN-H--GLDLRLVTIPSFFSKSACIYNPIIYCFMN
-KQFQACIM-KMV-C---GKA-------------------------------MTDES--DT
-CSSQKT-E--VSTVS-STQV----------------------------------------
----------------------------------------------GP-N---
->     8=opsin, greensensitive  human (fragment) S07060
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
---------------------------------------------------DLAETVIA-S
-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-V
-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPG
-VQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RAVAKQQKE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SESTQKAEKEVTRMV
-VVMVLAFC----------------------------------------------------
-------------------------------------------------------------
-------------------------------------------------------------
-----------------------------------------------------
->     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
-M-------------AQQWSLQRLA--GRHPQDSYE-------------------------
-------------------------------DSTQ--SSIFTY----TN------------
---------------------------SNST---RGPFEGPNY-HIA-----PRWV-----
-----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
-TISVVNQ-VY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-V
-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPG
-VQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RAVAKQQKE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SESTQKAEKEVTRMV
-VVMVLAFCFCWGPYAFFACFAAA-NPG-Y--PFHPLMAALPAFFAKSATIYNPVIYVFMN
-RQFRNCIL-QLF-----GKK-------------------------------VDDGS--EL
-SSASKT-E--VSSV---SSV----------------------------------------
----------------------------------------------SP-A---
->    10== Z68193   1 human Red Opsin <>[]
-M-------------AQQWSLQRLA--GRHPQDSYE-------------------------
-------------------------------DSTQ--SSIFTY----TN------------
---------------------------SNST---RGPFEGPNY-HIA-----PRWV-----
-----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
-TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-V
-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPG
-VQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RAVAKQQKE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SESTQKAEKEVTRMV
-VVMIFAYCVCWGPYTFFACFAAA-NPG-Y--AFHPLMAALPAYFAKSATIYNPVIYVFMN
-RQFRNCIL-QLF-----GKK-------------------------------VDDGS--EL
-SSASKT-E--VSSV---SSV----------------------------------------
----------------------------------------------SP-A---
->    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
-M-------------TEAWNVAVFA--ARRSRDD-D-------------------------
-------------------------------DTTR--GSVFTY----TN------------
---------------------------TNNT---RGPFEGPNY-HIA-----PRWV-----
-----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S
-TISVFNQ-IF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-I
-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELG
-CQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RAVAAQQKE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SESTQKAEREVSRMV
-VVMIVAFCICWGPYASFVSFAAA-NPG-Y--AFHPLAAALPAYFAKSATIYNPVIYVFMN
-RQFRNCIM-QLF-----GKK-------------------------------VDDGS--EA
-STTSRT-E--VSSVS-NSSV----------------------------------------
----------------------------------------------AP-A---
->    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
-M-------------AA-WEAAFAA--RRRHEE--E-------------------------
-------------------------------DTTR--DSVFTY----TN------------
---------------------------SNNT---RGPFEGPNY-HIA-----PRWV-----
-----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S
-TISVINQ-IS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-I
-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPG
-VQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RAVAAQQKE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------SESTQKAEKEVSRMV
-VVMIVAYCFCWGPYTFFACFAAA-NPG-Y--AFHPLAAALPAYFAKSATIYNPIIYVFMN
-RQFRNCIL-QLF-----GKK-------------------------------VDDGS--EV
-ST-SRT-E--VSSVS-NSSV----------------------------------------
----------------------------------------------SP-A---
->    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
-M-------------S-------------------S-------------------------
-------------------------------NSSQ--AP----------------------
---------------------------PNGT---PGPFDGPQWPYQA-----PQST-----
-----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S
-SVSLSNN-IN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-F
-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN-
--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RAAAAQQKE----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------ADTTQRAEREVTRMV
-IVMVMAFLLCWLPYSTFALVVAT-HKG-I--IIQPVLASLPSYFSKTATVYNPIIYVFMN
-KQFQSCLL-EMLCCGYQPQR-------------------------------TGKAS--PG
-TPGPHA-D--VTAAGLRNKV----------------------------------------
----------------------------------------------MP-AHPV
->    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
-M---------------------------------ES-G----------------------
-------------------------------NVSS---------------SLFGNVSTALR
-PEARLSA---ETRLLGWNVPPEELR------------------HIP-----EHWLTYPEP
-PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T
-PIFIYNS-FH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--
-KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFD
-TRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVESL---------------------RS-NVDKNKETAEIRIAKAA
-ITICFLFFCSWTPYGVMSLIGAF-GDK-T--LLTPGATMIPACACKMVACIDPFVYAISH
-PRYRMELQ---------KRCP------------------WLALNEKAPE--SSAVA--ST
-STTQEP-Q-------------------------QT-------------------------
----------------------------------------------TA-A---
->    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
-M---------------------------------EY-H----------------------
-------------------------------NVSS---------------VL-GNVSSVLR
-PDARLSA---ESRLLGWNVPPDELR------------------HIP-----EHWLIYPEP
-PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T
-PIFIYNS-FH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--
-KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFD
-TRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVDSL---------------------RS-NVDKSKEAAEIRIAKAA
-ITICFLFFASWTPYGVMSLIGAF-GDK-T--LLTPGATMIPACTCKMVACIDPFVYAISH
-PRYRMELQ---------KRCP------------------WLAISEKAPE--SRAAI--ST
-STTQEQ-Q-------------------------QT-------------------------
----------------------------------------------TA-A---
->    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
-M---------------------------------EPLC----------------------
-------------------------------NASE---------------PP-------LR
-PEAR-SSGNGDLQFLGWNVPPDQIQ------------------YIP-----EHWLTQLEP
-PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
-PIF--NS-FH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--
-NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFD
-TRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVESL---------------------RS-NVDKSKETAEIRIAKAA
-ITICFLFFVSWTPYGVMSLIGAF-GDK-S--LLTQGATMIPACTCKLVACIDPFVYAISH
-PRYRLELQ---------KRCP------------------WLGVNEKSGE--ISSAQ--ST
--TTQEQ-Q-------------------------QT-------------------------
----------------------------------------------TA-A---
->    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
-M---------------------------------DALC----------------------
-------------------------------NASE---------------PP-------LR
-PEARMSSGSDELQFLGWNVPPDQIQ------------------YIP-----EHWLTQLEP
-PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
-PIFIYNS-FH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--
-NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFD
-TRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVESL---------------------RS-NVDKSKETAEIRIAKAA
-ITICFLFFVSWTPYGVMSLIGAF-GDK-S--LLTPGATMIPACTCKLVACIEPFVYAISH
-PRYRMELQ---------KRCP------------------WLGVNEKSGE--ASSAQ--ST
--TTQEQTQ-------------------------QT-------------------------
----------------------------------------------SA-A---
->    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
-M---------------------------------------------TNATGPQMAYYG--
----AASMDFGYPE-----------------GVSI---------------VD---------
------------------FVRPEIKP------------------YVH-----QHWYNYPPV
-NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V
-PFFTYNC-FSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-P
-KLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFN
-TFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVSTL---------------------RS-N-EADAQRAEIRIAKTA
-LVNVSLWFICWTPYALISLKGVM-GDT-S--GITPLVSTLPALLAKSCSCYNPFVYAISH
-PKYRLAIT---------QHLP------------------WFCVHETETKS-NDDSQ--SN
-STVAQ-------------------------------------------------------
----------------------------------------------DK-A---
->    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
-M---------------------------------------------ANVTGPQMAFYG--
----SGAATFGYPE-----------------GMTV---------------AD---------
------------------FVPDRVKH------------------MVL-----DHWYNYPPV
-NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F
-PPFCYNC-FSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-P
-KLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMN
-TITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVTNL---------------------RS-N-EAETQRAEIRIAKTA
-LVNVSLWFICWTPYAAITIQGLL-GNA-E--GITPLLTTLPALLAKSCSCYNPFVYAISH
-PKFRLAIT---------QHLP------------------WFCVHEKDPND-VEENQ--SS
-NTQTQ-------------------------------------------------------
----------------------------------------------EK-S---
->    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
-M---------------------------------E------SFAVAAAQLGPHFAPLS--
-------------------------------NGSV---------------VD---------
------------------KVTPDMAH------------------LIS-----PYWNQFPAM
-DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-R
-PMTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWN
-PRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVKSL---------------------RS-S-EDAEKSAEGKLAKVA
-LVTITLWFMAWTPYLVINCMGLF--KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
-PKYRLALK---------EKCP------------------CCVFGKVDDGK-SSDAQ--SQ
-ATASEA-E----------------------------------------------------
----------------------------------------------SK-A---
->    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
-M---------------------------------E------SFAVAAAQLGPHFAPLS--
-------------------------------NGSV---------------VD---------
------------------KVTPDMAH------------------LIS-----PYWNQFPAM
-DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-R
-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWN
-PRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVKSL---------------------RS-S-EDAEKSAEGKLAKVA
-LVTITLWFMAWTPYLVINCMGLF--KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
-PKYRLALK---------EKCP------------------CCVFGKVDDGK-SSDAQ--SQ
-ATASEA-E----------------------------------------------------
----------------------------------------------SK-A---
->    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
-M---------------------------------D------SFAAVATQLGPQFAAPS--
-------------------------------NGSV---------------VD---------
------------------KVTPDMAH------------------LIS-----PYWDQFPAM
-DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
-PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-R
-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWN
-PRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVKSL---------------------RS-S-EDADKSAEGKLAKVA
-LVTISLWFMAWTPYLVINCMGLF--KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
-PKYRLALK---------EKCP------------------CCVFGKVDDGK-SSEAQ--SQ
-ATTSEA-E----------------------------------------------------
----------------------------------------------SK-A---
->    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
-M---------------------------------ER-SHLPETPFDLAHSGPRFQAQS--
----SG-------------------------NGSV---------------LD---------
------------------NVLPDMAH------------------LVN-----PYWSRFAPM
-DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
-PVMIINF-YY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-T
-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWN
-PRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVKSL---------------------RS-S-EDCDKSAEGKLAKVA
-LTTISLWFMAWTPYLVICYFGLF--KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
-PKYRIVLK---------EKCP------------------MCVFGNTDEPKPDAPAS--DT
-ETTSEA-D----------------------------------------------------
----------------------------------------------SK-A---
->    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
-M---------------------------------ER-SLLPEPPLAMALLGPRFEAQT--
----GG-------------------------NRSV---------------LD---------
------------------NVLPDMAP------------------LVN-----PHWSRFAPM
-DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
-PVMIINF-YY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-T
-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWN
-PRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVKSL---------------------RS-S-EDCDKSAENKLAKVA
-LTTISLWFMAWTPYLIICYFGLF--KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
-PNDRLVLK---------EKCP------------------MCVCGTTDEPKPDAPPS--DT
-ETTSEA-E----------------------------------------------------
----------------------------------------------SK-D---
->    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
-M---------------------------------------------IAVSGPSYEAFS--
----YG----GQAR---------------FNNQTV---------------VD---------
------------------KVPPDMLH------------------LID-----ANWYQYPPL
-NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S
-PPMVINC-YY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-K
-PLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLL
-SASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVASL---------------------RS-S-ENQNTSAECKLAKVA
-LMTISLWFMAWTPYLVINFSGIF--NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISH
-PKYRAALF---------AKFP------------------SLAC-AAEPSS-DAVST--TS
-GTTTVT-D----------------------------------------------------
------------------------------------------NEK-SN-A---
->    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
-M-----------------------------------------------ANQLSYSSLG--
----WP----YQP------------------NASV---------------VD---------
------------------TMPKEMLY------------------MIH-----EHWYAFPPM
-NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M
-PTMTSNC-FA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-A
-PLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWS
-SASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------MNVASL---------------------RANA-DQQKQSAECRLAKVA
-MMTVGLWFMAWTPYLIISWAGVF--SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISH
-PRYKAALY---------QRFP------------------SLACGSGESGS-DVKSE--AS
-ATTTME-E----------------------------------------------------
------------------------------------------KPKIPE-A---
->    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
-M-----------------------------------------------------------
----------VESTTLVNQTW-------WY-NPTV---------------D----------
---------------------------------------------IH-----PHWAKFDPI
-PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF
-PLKTISA-FM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASK
-KMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPS
-TRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------LNAKEL---------------------RK---AQAGASAEMKLAKIS
-MVIITQFMLSWSPYAIIALLAQF-GPA-E--WVTPYAAELPVLFAKASAIHNPIVYSVSH
-PKFREAIQ---------TTFPWL--------------LTCCQFDEKECED-ANDAE--EE
-VVASER---GGESRD-AAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYP
-PPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQA-YQ-A---
->    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
-M-----------------------------------------------------------
----------GRDLR-DNETW-------WY-NPSI---------------V----------
---------------------------------------------VH-----PHWREFDQV
-PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF
-PLMTISC-FL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASK
-KMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDST
-TRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR----------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------LNAKEL---------------------RK---AQAGANAEMRLAKIS
-IVIVSQFLLSWSPYAVVALLAQF-GPL-E--WVTPYAAQLPVMFAKASAIHNPMIYSVSH
-PKFREAIS---------QTFPWV--------------LTCCQFDDKETED-DKDAE--TE
-IPAGES-SDAAPSAD-AAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQGY--
-PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQA-YQ-A---
->    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
-MMDVNSSGRPDL----YGHLRSFL--LPE-----------------VGRGLPDLSPDGGA
-DPVAG-------------SWAPHLLS----EVTA--SPAPTW------------------
------------------DAPPDNAS-GCGE-------------QIN-------------Y
-GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M
-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPV
-RQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------
---GYTIYSTAVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF-------------
-----PGF---------------------------------PRVEPDS-------------
---------VIALNGIVKLQKEV--------------------------------------
---------EE--CANLSRLLKH------------------ER-K-NISIFKREQKAATTL
-GIIVGAFTVCWLPFFLLSTARPFICGT-SCSCIPLWVERTFLWLGYANSLINPFIYAFFN
-RDLRTTYR-SLL----------QC---QYRNINRKLSA-------------AGMHE--AL
-KLAERP-E--------RPEF-----VL------QN-------------------------
-------ADYCRKKGHD--------------------------------S---
->    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
-M-----------------------------------------------------------
----------------------PHLLSGFL-EVTA--SPAPTW------------------
------------------DAPPDNVS-GCGE-------------QIN-------------Y
-GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPV
-RQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------
---GYTIYSTAVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF-------------
-----PGF---------------------------------PRVQPES-------------
---------VISLNGVVKLQKEV--------------------------------------
---------EE--CANLSRLLKH------------------ER-K-NISIFKREQKAATTL
-GIIVGAFTVCWLPFFLLSTARPFICGT-SCSCIPLWVERTCLWLGYANSLINPFIYAFFN
-RDLRPTSR-SLL----------QC---QYRNINRKLSA-------------AGMHE--AL
-KLAERP-E--------RSEF-----VL------QN-------------------------
-------SDHCGKKGHD--------------------------------T---
->    31=p A47425 serotonin receptor 5HT-7 - rat
-M-----------------------------------------------------------
----------------------PHLLSGFL-EVTA--SPAPTW------------------
------------------DAPPDNVS-GCGE-------------QIN-------------Y
-GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
-PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPV
-RQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------
---GYTIYSTAVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF-------------
-----PGF---------------------------------PRVQPES-------------
---------VISLNGVVKLQKEV--------------------------------------
---------EE--CANLSRLLKH------------------ER-K-NISIFKREQKAATTL
-GIIVGAFTVCWLPFFLLSTARPFICGT-SCSCIPLWVERTCLWLGYANSLINPFIYAFFN
-RDLRTTYR-SLL----------QC---QYRNINRKLSA-------------AGMHE--AL
-KLAERP-E--------RSEF-----VL------QN-------------------------
-------SDHCGKKGHD--------------------------------T---
->    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
-M-DVLSPGQ-----------------GNN-----------------TTSPPAPFETGG--
-------------------------------NTTG--ISDVTV------------------
-------------------------------------------------------------
---SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVN
-KRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTISKDH--------
---GYTIYSTFGAFYIPLLLMLVLYGRIF-------RAARFRIRK----------------
------------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRL
-GVESKAGGALCANGAVRQGDDG----AALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASF
-ERKN----ERN--------------------A--------EA-K-RKMALARERKTVKTL
-GIIMGTFILCWLPFFIVALVLPF-CES-SC-HMPTLLGAIINWLGYSNSLLNPVIYAYFN
-KDFQNAFK-KII---------------KCKFCRQ--------------------------
-------------------------------------------------------------
-----------------------------------------------------
->    33=p A35181 serotonin receptor class 1A - rat
-M-DVFSFGQ-----------------GNN-----------------TTASQEPFGTGG--
-------------------------------NVTS--ISDVTF------------------
-------------------------------------------------------------
---SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
-PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVN
-KRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTISKDH--------
---GYTIYSTFGAFYIPLLLMLVLYGRIF-------RAARFRIRK----------------
------------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGSGDWRR
-CAENRAVGTPCTNGAVRQGDDE----ATLEVIEVHRVGNSKEHLPLPSESGSNSYAPACL
-ERKN----ERN--------------------A--------EA-K-RKMALARERKTVKTL
-GIIMGTFILCWLPFFIVALVLPF-CES-SC-HMPALLGAIINWLGYSNSLLNPVIYAYFN
-KDFQNAFK-KII---------------KCKFCRR--------------------------
-------------------------------------------------------------
-----------------------------------------------------
->    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
-M-ANFTFGDLALDVARMGGLASTPSGLRS-----------------TGLTTPGLSPTG--
-------------------------------LVTS--DFNDSYGLTGQF-IN-GSHS----
------------------SRSRDNAS-ANDT-------------SATNMTDDRYWS-LTVY
-SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIR
-RRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------
---GYTIFSTVGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETT
-LVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK-------------
----NRAKKLPENANGVNSNSSS------------------SERLKQIQIETAEAFANGCA
-EEASIAMLERQ-CNNGKKISSNDTPYS-------------RT-R-EKLELKRERKAARTL
-AIITGAFLICWLPFFIIALIGPF-VDP-E--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
-PEFRSAFQ-KIL----------FG---KYRRGHR--------------------------
-------------------------------------------------------------
-----------------------------------------------------
->    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
-M-ANFTFGDLALDVARMGGLASTPSGLRS-----------------TGLTTPGLSPTG--
-------------------------------LVTS--DFNDSYGLTGQF-IN-GSHS----
------------------SRSRDNAS-ANDT-------------SATNMTDDRYWS-LTVY
-SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
-PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIR
-RRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------
---GYTIFSTVGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETT
-LVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK-------------
----NRAKKLPENANGVNSNSSS------------------SERLKQIQIETAEAFANGCA
-EEASIAMLERQ-CNNGKKISSNDTPYS-------------RT-R-EKLELKRERKAARTL
-AIITGAFLICWLPFFIIALIGPF-VDP-E--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
-PEFRSAFQ-KIL----------FG---KYRRGHR--------------------------
-------------------------------------------------------------
-----------------------------------------------------
->    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
-M-EGAE-GQEELDWEAL--YLRLP--LQN-----------------CSWNSTGWEPNW--
-------------------------------NVTV--VPNTTW-----------WQA----
------------------SAPFDTPA-ALVR-------------AAAK-------------
---------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M
-PLGAVYE-VV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIH
-ASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV--------
---GYQIFATASSFYVPVLIILILYWRIY-------QTARKRIR-----------------
-----------------------------RRRGATARGGVGPPP-----------------
---------VPAGGALVAGGGSGGIAAAVVAVI--------GRPLPTISETTTTGFTNVSS
-NNTS---PEKQSCANGLEADPPTTGYGAVAAAYYPSLVRRKP-K-EAADSKRERKAAKTL
-AIITGAFVACWLPFFVLAILVPT-CDC-E---VSPVLTSLSLWLGYFNSTLNPVIYTVFS
-PEFRHAFQ-RLL----------CGRRVRRRRAPQ--------------------------
-------------------------------------------------------------
-----------------------------------------------------