Mac binaries
[jabaws.git] / website / archive / binaries / mac / src / mafft / test / sample.parttree
diff --git a/website/archive/binaries/mac/src/mafft/test/sample.parttree b/website/archive/binaries/mac/src/mafft/test/sample.parttree
new file mode 100644 (file)
index 0000000..e82ff0e
--- /dev/null
@@ -0,0 +1,540 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+M-----------------------------------------------------------
+------------------------------NGTE--GDNFYV----PF------------
+--------------------------SNKTGLARSPYEYPQY-YLA-----EPWK-----
+----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F
+TVTMYTS-MN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-F
+RFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFN
+NESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SASTQKAEKEVTRMV
+VLMVIGFLVCWVPYASVAFYIFT-HQG-S--DFGATFMTLPAFFAKSSALYNPVIYILMN
+KQFRNCMITTLC-C---GKNP------------------------------LGDDE--SG
+ASTSKT-E--VSSVS-TSPV----------------------------------------
+---------------------------------------------SP-A---
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+M-----------------------------------------------------------
+------------------------------NGTE--GPNFYV----PF------------
+--------------------------SNITGVVRSPFEQPQY-YLA-----EPWQ-----
+----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F
+TTTLYTS-LH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-F
+RFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVN
+NESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SATTQKAEKEVTRMV
+IIMVIFFLICWLPYASVAMYIFT-HQG-S--NFGPIFMTLPAFFAKTASIYNPIIYIMMN
+KQFRNCMLTSLC-C---GKNP------------------------------LGDDE--AS
+ATASKT-E--------TSQV----------------------------------------
+---------------------------------------------AP-A---
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+M-----------------------------------------------------------
+------------------------------NGTE--GINFYV----PM------------
+--------------------------SNKTGVVRSPFEYPQY-YLA-----EPWK-----
+----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F
+TVTFYTA-WN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-F
+RFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYH
+NESYVLYMFVIHFIIPVVVIFFSYGRLICKV----REAAAQQQE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SATTQKAEKEVTRMV
+ILMVLGFMLAWTPYAVVAFWIFT-NKG-A--DFTATLMAVPAFFSKSSSLYNPIIYVLMN
+KQFRNCMITTIC-C---GKNP------------------------------FGDEDVSST
+VSQSKT-E--VSSVS-SSQV----------------------------------------
+---------------------------------------------SP-A---
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+M-----------------------------------------------------------
+------------------------------NGTE--GKNFYV----PM------------
+--------------------------SNRTGLVRSPFEYPQY-YLA-----EPWQ-----
+----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F
+TVTFYTA-IN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-F
+KFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYN
+NESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KAAAAQQQD----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SASTQKAEREVTKMV
+ILMVFGFLIAWTPYATVAAWIFF-NKG-A--DFSAKFMAIPAFFSKSSALYNPVIYVLLN
+KQFRNCMLTTIF-C---GKNP------------------------------LGDDE-SST
+VSTSKT-E--VSS------V----------------------------------------
+---------------------------------------------SP-A---
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+M-----------------------------------------------------------
+------------------------------NGTE--GNNFYV----PL------------
+--------------------------SNRTGLVRSPFEYPQY-YLA-----EPWQ-----
+----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F
+TVTFYTA-IN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-F
+KFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYN
+NESYVLYMFICHFILPVTIIFFTYGRLVCTV----KAAAAQQQD----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SASTQKAEREVTKMV
+ILMVLGFLVAWTPYATVAAWIFF-NKG-A--AFSAQFMAIPAFFSKTSALYNPVIYVLLN
+KQFRSCMLTTLF-C---GKNP------------------------------LGDEE-SST
+VSTSKT-E--VSS------V----------------------------------------
+---------------------------------------------SP-A---
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+M-----------------------------------------------------------
+------------------------------KQVPEFHEDFYI----PIPL----------
+------------------------DINNLS--AYSPFLVPQD-HLG-----NQGI-----
+----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S
+PLSFYSF-FN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-F
+TFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYN
+NESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KLAAKAQAD----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SASTQKAEREVTKMV
+VVMVLGFLVCWAPYASFSLWIVS-HRG-E--EFDLRMATIPSCLSKASTVYNPVIYVLMN
+KQFRSCMM-KMV-C---GKN-------------------------------IEEDE--AS
+TSSQVT-Q--VSS------V----------------------------------------
+---------------------------------------------APEK---
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+M-----------------------------------------------------------
+------------------------------RKMS--EEEFYL-------F----------
+--------------------------KNISSV--GPWDGPQY-HIA-----PVWA-----
+----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V
+FPVFVAS-CN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-F
+RFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYR
+SESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KAVAAQQQE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SATTQKAEREVSRMV
+VVMVGSFCVCYVPYAAFAMYMVN-NRN-H--GLDLRLVTIPSFFSKSACIYNPIIYCFMN
+KQFQACIM-KMV-C---GKA-------------------------------MTDES--DT
+CSSQKT-E--VSTVS-STQV----------------------------------------
+---------------------------------------------GP-N---
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------------------------------DLAETVIA-S
+TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-V
+RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPG
+VQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RAVAKQQKE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SESTQKAEKEVTRMV
+VVMVLAFC----------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+----------------------------------------------------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+M-------------AQQWSLQRLA--GRHPQDSYE-------------------------
+------------------------------DSTQ--SSIFTY----TN------------
+--------------------------SNST---RGPFEGPNY-HIA-----PRWV-----
+----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
+TISVVNQ-VY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-V
+RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPG
+VQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RAVAKQQKE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SESTQKAEKEVTRMV
+VVMVLAFCFCWGPYAFFACFAAA-NPG-Y--PFHPLMAALPAFFAKSATIYNPVIYVFMN
+RQFRNCIL-QLF-----GKK-------------------------------VDDGS--EL
+SSASKT-E--VSSV---SSV----------------------------------------
+---------------------------------------------SP-A---
+>    10== Z68193   1 human Red Opsin <>[]
+M-------------AQQWSLQRLA--GRHPQDSYE-------------------------
+------------------------------DSTQ--SSIFTY----TN------------
+--------------------------SNST---RGPFEGPNY-HIA-----PRWV-----
+----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
+TISIVNQ-VS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-V
+RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPG
+VQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RAVAKQQKE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SESTQKAEKEVTRMV
+VVMIFAYCVCWGPYTFFACFAAA-NPG-Y--AFHPLMAALPAYFAKSATIYNPVIYVFMN
+RQFRNCIL-QLF-----GKK-------------------------------VDDGS--EL
+SSASKT-E--VSSV---SSV----------------------------------------
+---------------------------------------------SP-A---
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+M-------------TEAWNVAVFA--ARRSRDD-D-------------------------
+------------------------------DTTR--GSVFTY----TN------------
+--------------------------TNNT---RGPFEGPNY-HIA-----PRWV-----
+----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S
+TISVFNQ-IF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-I
+KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELG
+CQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RAVAAQQKE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SESTQKAEREVSRMV
+VVMIVAFCICWGPYASFVSFAAA-NPG-Y--AFHPLAAALPAYFAKSATIYNPVIYVFMN
+RQFRNCIM-QLF-----GKK-------------------------------VDDGS--EA
+STTSRT-E--VSSVS-NSSV----------------------------------------
+---------------------------------------------AP-A---
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+M-------------AA-WEAAFAA--RRRHEE--E-------------------------
+------------------------------DTTR--DSVFTY----TN------------
+--------------------------SNNT---RGPFEGPNY-HIA-----PRWV-----
+----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S
+TISVINQ-IS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-I
+KFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPG
+VQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RAVAAQQKE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------SESTQKAEKEVSRMV
+VVMIVAYCFCWGPYTFFACFAAA-NPG-Y--AFHPLAAALPAYFAKSATIYNPIIYVFMN
+RQFRNCIL-QLF-----GKK-------------------------------VDDGS--EV
+ST-SRT-E--VSSVS-NSSV----------------------------------------
+---------------------------------------------SP-A---
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+M-------------S-------------------S-------------------------
+------------------------------NSSQ--AP----------------------
+--------------------------PNGT---PGPFDGPQWPYQA-----PQST-----
+----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S
+SVSLSNN-IN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-F
+QFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN-
+-NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RAAAAQQKE----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------ADTTQRAEREVTRMV
+IVMVMAFLLCWLPYSTFALVVAT-HKG-I--IIQPVLASLPSYFSKTATVYNPIIYVFMN
+KQFQSCLL-EMLCCGYQPQR-------------------------------TGKAS--PG
+TPGPHA-D--VTAAGLRNKV----------------------------------------
+---------------------------------------------MP-AHPV
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+M---------------------------------ES-G----------------------
+------------------------------NVSS---------------SLFGNVSTALR
+PEARLSA---ETRLLGWNVPPEELR------------------HIP-----EHWLTYPEP
+PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T
+PIFIYNS-FH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--
+KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFD
+TRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVESL---------------------RS-NVDKNKETAEIRIAKAA
+ITICFLFFCSWTPYGVMSLIGAF-GDK-T--LLTPGATMIPACACKMVACIDPFVYAISH
+PRYRMELQ---------KRCP------------------WLALNEKAPE--SSAVA--ST
+STTQEP-Q-------------------------QT-------------------------
+---------------------------------------------TA-A---
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+M---------------------------------EY-H----------------------
+------------------------------NVSS---------------VL-GNVSSVLR
+PDARLSA---ESRLLGWNVPPDELR------------------HIP-----EHWLIYPEP
+PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T
+PIFIYNS-FH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--
+KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFD
+TRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVDSL---------------------RS-NVDKSKEAAEIRIAKAA
+ITICFLFFASWTPYGVMSLIGAF-GDK-T--LLTPGATMIPACTCKMVACIDPFVYAISH
+PRYRMELQ---------KRCP------------------WLAISEKAPE--SRAAI--ST
+STTQEQ-Q-------------------------QT-------------------------
+---------------------------------------------TA-A---
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+M---------------------------------EPLC----------------------
+------------------------------NASE---------------PP-------LR
+PEAR-SSGNGDLQFLGWNVPPDQIQ------------------YIP-----EHWLTQLEP
+PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
+PIF--NS-FH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--
+NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFD
+TRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVESL---------------------RS-NVDKSKETAEIRIAKAA
+ITICFLFFVSWTPYGVMSLIGAF-GDK-S--LLTQGATMIPACTCKLVACIDPFVYAISH
+PRYRLELQ---------KRCP------------------WLGVNEKSGE--ISSAQ--ST
+-TTQEQ-Q-------------------------QT-------------------------
+---------------------------------------------TA-A---
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+M---------------------------------DALC----------------------
+------------------------------NASE---------------PP-------LR
+PEARMSSGSDELQFLGWNVPPDQIQ------------------YIP-----EHWLTQLEP
+PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
+PIFIYNS-FH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--
+NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFD
+TRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVESL---------------------RS-NVDKSKETAEIRIAKAA
+ITICFLFFVSWTPYGVMSLIGAF-GDK-S--LLTPGATMIPACTCKLVACIEPFVYAISH
+PRYRMELQ---------KRCP------------------WLGVNEKSGE--ASSAQ--ST
+-TTQEQTQ-------------------------QT-------------------------
+---------------------------------------------SA-A---
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+M---------------------------------------------TNATGPQMAYYG--
+---AASMDFGYPE-----------------GVSI---------------VD---------
+-----------------FVRPEIKP------------------YVH-----QHWYNYPPV
+NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V
+PFFTYNC-FSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-P
+KLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFN
+TFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVSTL---------------------RS-N-EADAQRAEIRIAKTA
+LVNVSLWFICWTPYALISLKGVM-GDT-S--GITPLVSTLPALLAKSCSCYNPFVYAISH
+PKYRLAIT---------QHLP------------------WFCVHETETKS-NDDSQ--SN
+STVAQ-------------------------------------------------------
+---------------------------------------------DK-A---
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+M---------------------------------------------ANVTGPQMAFYG--
+---SGAATFGYPE-----------------GMTV---------------AD---------
+-----------------FVPDRVKH------------------MVL-----DHWYNYPPV
+NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F
+PPFCYNC-FSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-P
+KLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMN
+TITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVTNL---------------------RS-N-EAETQRAEIRIAKTA
+LVNVSLWFICWTPYAAITIQGLL-GNA-E--GITPLLTTLPALLAKSCSCYNPFVYAISH
+PKFRLAIT---------QHLP------------------WFCVHEKDPND-VEENQ--SS
+NTQTQ-------------------------------------------------------
+---------------------------------------------EK-S---
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+M---------------------------------E------SFAVAAAQLGPHFAPLS--
+------------------------------NGSV---------------VD---------
+-----------------KVTPDMAH------------------LIS-----PYWNQFPAM
+DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
+PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-R
+PMTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWN
+PRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVKSL---------------------RS-S-EDAEKSAEGKLAKVA
+LVTITLWFMAWTPYLVINCMGLF--KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
+PKYRLALK---------EKCP------------------CCVFGKVDDGK-SSDAQ--SQ
+ATASEA-E----------------------------------------------------
+---------------------------------------------SK-A---
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+M---------------------------------E------SFAVAAAQLGPHFAPLS--
+------------------------------NGSV---------------VD---------
+-----------------KVTPDMAH------------------LIS-----PYWNQFPAM
+DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
+PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-R
+PMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWN
+PRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVKSL---------------------RS-S-EDAEKSAEGKLAKVA
+LVTITLWFMAWTPYLVINCMGLF--KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
+PKYRLALK---------EKCP------------------CCVFGKVDDGK-SSDAQ--SQ
+ATASEA-E----------------------------------------------------
+---------------------------------------------SK-A---
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+M---------------------------------D------SFAAVATQLGPQFAAPS--
+------------------------------NGSV---------------VD---------
+-----------------KVTPDMAH------------------LIS-----PYWDQFPAM
+DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
+PMMGINL-YF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-R
+PMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWN
+PRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVKSL---------------------RS-S-EDADKSAEGKLAKVA
+LVTISLWFMAWTPYLVINCMGLF--KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISH
+PKYRLALK---------EKCP------------------CCVFGKVDDGK-SSEAQ--SQ
+ATTSEA-E----------------------------------------------------
+---------------------------------------------SK-A---
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+M---------------------------------ER-SHLPETPFDLAHSGPRFQAQS--
+---SG-------------------------NGSV---------------LD---------
+-----------------NVLPDMAH------------------LVN-----PYWSRFAPM
+DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
+PVMIINF-YY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-T
+PMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWN
+PRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVKSL---------------------RS-S-EDCDKSAEGKLAKVA
+LTTISLWFMAWTPYLVICYFGLF--KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
+PKYRIVLK---------EKCP------------------MCVFGNTDEPKPDAPAS--DT
+ETTSEA-D----------------------------------------------------
+---------------------------------------------SK-A---
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+M---------------------------------ER-SLLPEPPLAMALLGPRFEAQT--
+---GG-------------------------NRSV---------------LD---------
+-----------------NVLPDMAP------------------LVN-----PHWSRFAPM
+DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
+PVMIINF-YY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-T
+PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWN
+PRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVKSL---------------------RS-S-EDCDKSAENKLAKVA
+LTTISLWFMAWTPYLIICYFGLF--KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISH
+PNDRLVLK---------EKCP------------------MCVCGTTDEPKPDAPPS--DT
+ETTSEA-E----------------------------------------------------
+---------------------------------------------SK-D---
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+M---------------------------------------------IAVSGPSYEAFS--
+---YG----GQAR---------------FNNQTV---------------VD---------
+-----------------KVPPDMLH------------------LID-----ANWYQYPPL
+NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S
+PPMVINC-YY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-K
+PLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLL
+SASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVASL---------------------RS-S-ENQNTSAECKLAKVA
+LMTISLWFMAWTPYLVINFSGIF--NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISH
+PKYRAALF---------AKFP------------------SLAC-AAEPSS-DAVST--TS
+GTTTVT-D----------------------------------------------------
+-----------------------------------------NEK-SN-A---
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+M-----------------------------------------------ANQLSYSSLG--
+---WP----YQP------------------NASV---------------VD---------
+-----------------TMPKEMLY------------------MIH-----EHWYAFPPM
+NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M
+PTMTSNC-FA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-A
+PLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWS
+SASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------MNVASL---------------------RANA-DQQKQSAECRLAKVA
+MMTVGLWFMAWTPYLIISWAGVF--SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISH
+PRYKAALY---------QRFP------------------SLACGSGESGS-DVKSE--AS
+ATTTME-E----------------------------------------------------
+-----------------------------------------KPKIPE-A---
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+M-----------------------------------------------------------
+---------VESTTLVNQTW-------WY-NPTV---------------D----------
+--------------------------------------------IH-----PHWAKFDPI
+PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF
+PLKTISA-FM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASK
+KMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPS
+TRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------LNAKEL---------------------RK---AQAGASAEMKLAKIS
+MVIITQFMLSWSPYAIIALLAQF-GPA-E--WVTPYAAELPVLFAKASAIHNPIVYSVSH
+PKFREAIQ---------TTFPWL--------------LTCCQFDEKECED-ANDAE--EE
+VVASER---GGESRD-AAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGAYP
+PPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQA-YQ-A---
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+M-----------------------------------------------------------
+---------GRDLR-DNETW-------WY-NPSI---------------V----------
+--------------------------------------------VH-----PHWREFDQV
+PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF
+PLMTISC-FL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASK
+KMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDST
+TRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR----------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------LNAKEL---------------------RK---AQAGANAEMRLAKIS
+IVIVSQFLLSWSPYAVVALLAQF-GPL-E--WVTPYAAQLPVMFAKASAIHNPMIYSVSH
+PKFREAIS---------QTFPWV--------------LTCCQFDDKETED-DKDAE--TE
+IPAGES-SDAAPSAD-AAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQGY--
+PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQA-YQ-A---
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+MMDVNSSGRPDL----YGHLRSFL--LPE-----------------VGRGLPDLSPDGGA
+DPVAG-------------SWAPHLLS----EVTA--SPAPTW------------------
+-----------------DAPPDNAS-GCGE-------------QIN-------------Y
+GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M
+PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPV
+RQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------
+--GYTIYSTAVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF-------------
+----PGF---------------------------------PRVEPDS-------------
+--------VIALNGIVKLQKEV--------------------------------------
+--------EE--CANLSRLLKH------------------ER-K-NISIFKREQKAATTL
+GIIVGAFTVCWLPFFLLSTARPFICGT-SCSCIPLWVERTFLWLGYANSLINPFIYAFFN
+RDLRTTYR-SLL----------QC---QYRNINRKLSA-------------AGMHE--AL
+KLAERP-E--------RPEF-----VL------QN-------------------------
+------ADYCRKKGHD--------------------------------S---
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+M-----------------------------------------------------------
+---------------------PHLLSGFL-EVTA--SPAPTW------------------
+-----------------DAPPDNVS-GCGE-------------QIN-------------Y
+GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
+PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPV
+RQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------
+--GYTIYSTAVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF-------------
+----PGF---------------------------------PRVQPES-------------
+--------VISLNGVVKLQKEV--------------------------------------
+--------EE--CANLSRLLKH------------------ER-K-NISIFKREQKAATTL
+GIIVGAFTVCWLPFFLLSTARPFICGT-SCSCIPLWVERTCLWLGYANSLINPFIYAFFN
+RDLRPTSR-SLL----------QC---QYRNINRKLSA-------------AGMHE--AL
+KLAERP-E--------RSEF-----VL------QN-------------------------
+------SDHCGKKGHD--------------------------------T---
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+M-----------------------------------------------------------
+---------------------PHLLSGFL-EVTA--SPAPTW------------------
+-----------------DAPPDNVS-GCGE-------------QIN-------------Y
+GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
+PFVSVTDLIG-GKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPV
+RQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------
+--GYTIYSTAVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF-------------
+----PGF---------------------------------PRVQPES-------------
+--------VISLNGVVKLQKEV--------------------------------------
+--------EE--CANLSRLLKH------------------ER-K-NISIFKREQKAATTL
+GIIVGAFTVCWLPFFLLSTARPFICGT-SCSCIPLWVERTCLWLGYANSLINPFIYAFFN
+RDLRTTYR-SLL----------QC---QYRNINRKLSA-------------AGMHE--AL
+KLAERP-E--------RSEF-----VL------QN-------------------------
+------SDHCGKKGHD--------------------------------T---
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+M-DVLSPGQ-----------------GNN-----------------TTSPPAPFETGG--
+------------------------------NTTG--ISDVTV------------------
+------------------------------------------------------------
+--SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
+PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVN
+KRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTISKDH--------
+--GYTIYSTFGAFYIPLLLMLVLYGRIF-------RAARFRIRK----------------
+-----------------------TVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRL
+GVESKAGGALCANGAVRQGDDG----AALEVIEVHRVGNSKEHLPLPSEAGPTPCAPASF
+ERKN----ERN--------------------A--------EA-K-RKMALARERKTVKTL
+GIIMGTFILCWLPFFIVALVLPF-CES-SC-HMPTLLGAIINWLGYSNSLLNPVIYAYFN
+KDFQNAFK-KII---------------KCKFCRQ--------------------------
+------------------------------------------------------------
+----------------------------------------------------
+>    33=p A35181 serotonin receptor class 1A - rat
+M-DVFSFGQ-----------------GNN-----------------TTASQEPFGTGG--
+------------------------------NVTS--ISDVTF------------------
+------------------------------------------------------------
+--SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
+PMAALYQ-VL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVN
+KRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTISKDH--------
+--GYTIYSTFGAFYIPLLLMLVLYGRIF-------RAARFRIRK----------------
+-----------------------TVRKVEKKGAGTSLGTSSAPPPKKSLNGQPGSGDWRR
+CAENRAVGTPCTNGAVRQGDDE----ATLEVIEVHRVGNSKEHLPLPSESGSNSYAPACL
+ERKN----ERN--------------------A--------EA-K-RKMALARERKTVKTL
+GIIMGTFILCWLPFFIVALVLPF-CES-SC-HMPALLGAIINWLGYSNSLLNPVIYAYFN
+KDFQNAFK-KII---------------KCKFCRR--------------------------
+------------------------------------------------------------
+----------------------------------------------------
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+M-ANFTFGDLALDVARMGGLASTPSGLRS-----------------TGLTTPGLSPTG--
+------------------------------LVTS--DFNDSYGLTGQF-IN-GSHS----
+-----------------SRSRDNAS-ANDT-------------SATNMTDDRYWS-LTVY
+SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
+PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIR
+RRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------
+--GYTIFSTVGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETT
+LVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK-------------
+---NRAKKLPENANGVNSNSSS------------------SERLKQIQIETAEAFANGCA
+EEASIAMLERQ-CNNGKKISSNDTPYS-------------RT-R-EKLELKRERKAARTL
+AIITGAFLICWLPFFIIALIGPF-VDP-E--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
+PEFRSAFQ-KIL----------FG---KYRRGHR--------------------------
+------------------------------------------------------------
+----------------------------------------------------
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+M-ANFTFGDLALDVARMGGLASTPSGLRS-----------------TGLTTPGLSPTG--
+------------------------------LVTS--DFNDSYGLTGQF-IN-GSHS----
+-----------------SRSRDNAS-ANDT-------------SATNMTDDRYWS-LTVY
+SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
+PLSVVSE-IS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIR
+RRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------
+--GYTIFSTVGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETT
+LVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKK-------------
+---NRAKKLPENANGVNSNSSS------------------SERLKQIQIETAEAFANGCA
+EEASIAMLERQ-CNNGKKISSNDTPYS-------------RT-R-EKLELKRERKAARTL
+AIITGAFLICWLPFFIIALIGPF-VDP-E--GIPPFARSFVLWLGYFNSLLNPIIYTIFS
+PEFRSAFQ-KIL----------FG---KYRRGHR--------------------------
+------------------------------------------------------------
+----------------------------------------------------
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+M-EGAE-GQEELDWEAL--YLRLP--LQN-----------------CSWNSTGWEPNW--
+------------------------------NVTV--VPNTTW-----------WQA----
+-----------------SAPFDTPA-ALVR-------------AAAK-------------
+--------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M
+PLGAVYE-VV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIH
+ASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV--------
+--GYQIFATASSFYVPVLIILILYWRIY-------QTARKRIR-----------------
+----------------------------RRRGATARGGVGPPP-----------------
+--------VPAGGALVAGGGSGGIAAAVVAVI--------GRPLPTISETTTTGFTNVSS
+NNTS---PEKQSCANGLEADPPTTGYGAVAAAYYPSLVRRKP-K-EAADSKRERKAAKTL
+AIITGAFVACWLPFFVLAILVPT-CDC-E---VSPVLTSLSLWLGYFNSTLNPVIYTVFS
+PEFRHAFQ-RLL----------CGRRVRRRRAPQ--------------------------
+------------------------------------------------------------
+----------------------------------------------------