Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / aligntwomsas.cpp

diff --git a/website/archive/binaries/mac/src/muscle/aligntwomsas.cpp b/website/archive/binaries/mac/src/muscle/aligntwomsas.cpp
deleted file mode 100644 (file)
index d428c93..0000000
--- a/website/archive/binaries/mac/src/muscle/aligntwomsas.cpp
+++ /dev/null
@@ -1,41 +0,0 @@
-#include "muscle.h"\r
-#include "msa.h"\r
-#include "profile.h"\r
-#include "pwpath.h"\r
-#include "textfile.h"\r
-#include "timing.h"\r
-\r
-SCORE AlignTwoMSAs(const MSA &msa1, const MSA &msa2, MSA &msaOut, PWPath &Path,\r
-  bool bLockLeft, bool bLockRight)\r
-       {\r
-       const unsigned uLengthA = msa1.GetColCount();\r
-       const unsigned uLengthB = msa2.GetColCount();\r
-\r
-       ProfPos *PA = ProfileFromMSA(msa1);\r
-       ProfPos *PB = ProfileFromMSA(msa2);\r
-\r
-       if (bLockLeft)\r
-               {\r
-               PA[0].m_scoreGapOpen = MINUS_INFINITY;\r
-               PB[0].m_scoreGapOpen = MINUS_INFINITY;\r
-               }\r
-\r
-       if (bLockRight)\r
-               {\r
-               PA[uLengthA-1].m_scoreGapClose = MINUS_INFINITY;\r
-               PB[uLengthB-1].m_scoreGapClose = MINUS_INFINITY;\r
-               }\r
-\r
-       float r = (float) uLengthA/ (float) (uLengthB + 1); // +1 to prevent div 0\r
-       if (r < 1)\r
-               r = 1/r;\r
-\r
-       SCORE Score = GlobalAlign(PA, uLengthA, PB, uLengthB, Path);\r
-\r
-       AlignTwoMSAsGivenPath(Path, msa1, msa2, msaOut);\r
-\r
-       delete[] PA;\r
-       delete[] PB;\r
-\r
-       return Score;\r
-       }\r