Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / aligntwoprofs.cpp

diff --git a/website/archive/binaries/mac/src/muscle/aligntwoprofs.cpp b/website/archive/binaries/mac/src/muscle/aligntwoprofs.cpp
deleted file mode 100644 (file)
index dc42c63..0000000
--- a/website/archive/binaries/mac/src/muscle/aligntwoprofs.cpp
+++ /dev/null
@@ -1,31 +0,0 @@
-#include "muscle.h"\r
-#include "msa.h"\r
-#include "profile.h"\r
-#include "pwpath.h"\r
-\r
-SCORE GlobalAlign4(ProfPos *PA, unsigned uLengthA, ProfPos *PB,\r
-  unsigned uLengthB, PWPath &Path);\r
-\r
-SCORE AlignTwoProfs(\r
-  const ProfPos *PA, unsigned uLengthA, WEIGHT wA,\r
-  const ProfPos *PB, unsigned uLengthB, WEIGHT wB,\r
-  PWPath &Path, ProfPos **ptrPout, unsigned *ptruLengthOut)\r
-       {\r
-       assert(uLengthA < 100000);\r
-       assert(uLengthB < 100000);\r
-\r
-       float r = (float) uLengthA/ (float) (uLengthB + 1); // +1 to prevent div 0\r
-       if (r < 1)\r
-               r = 1/r;\r
-\r
-       SCORE Score = GlobalAlign(PA, uLengthA, PB, uLengthB, Path);\r
-\r
-       AlignTwoProfsGivenPath(Path, PA, uLengthB, wA/(wA + wB), PB, uLengthB, wB/(wA + wB),\r
-         ptrPout, ptruLengthOut);\r
-\r
-#if    HYDRO\r
-       if (ALPHA_Amino == g_Alpha)\r
-               Hydro(*ptrPout, *ptruLengthOut);\r
-#endif\r
-       return Score;\r
-       }\r