Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / alpha.h

diff --git a/website/archive/binaries/mac/src/muscle/alpha.h b/website/archive/binaries/mac/src/muscle/alpha.h
deleted file mode 100644 (file)
index 8a7af32..0000000
--- a/website/archive/binaries/mac/src/muscle/alpha.h
+++ /dev/null
@@ -1,106 +0,0 @@
-#ifndef        alpha_h\r
-#define        alpha_h\r
-\r
-bool StrHasAmino(const char *Str);\r
-bool StrHasGap(const char *Str);\r
-void ClearInvalidLetterWarning();\r
-void InvalidLetterWarning(char c, char w);\r
-void ReportInvalidLetters();\r
-\r
-extern unsigned g_CharToLetter[];\r
-extern unsigned g_CharToLetterEx[];\r
-\r
-extern char g_LetterToChar[];\r
-extern char g_LetterExToChar[];\r
-\r
-extern char g_UnalignChar[];\r
-extern char g_AlignChar[];\r
-\r
-extern bool g_IsWildcardChar[];\r
-extern bool g_IsResidueChar[];\r
-\r
-#define CharToLetter(c)                (g_CharToLetter[(unsigned char) (c)])\r
-#define CharToLetterEx(c)      (g_CharToLetterEx[(unsigned char) (c)])\r
-\r
-#define LetterToChar(u)                (g_LetterToChar[u])\r
-#define LetterExToChar(u)      (g_LetterExToChar[u])\r
-\r
-#define IsResidueChar(c)       (g_IsResidueChar[(unsigned char) (c)])\r
-#define IsGapChar(c)           ('-' == (c) || '.' == (c))\r
-#define IsWildcardChar(c)      (g_IsWildcardChar[(unsigned char) (c)])\r
-\r
-#define AlignChar(c)           (g_AlignChar[(unsigned char) (c)])\r
-#define UnalignChar(c)         (g_UnalignChar[(unsigned char) (c)])\r
-\r
-// AX=Amino alphabet with eXtensions (B, Z and X)\r
-enum AX\r
-       {\r
-       AX_A,\r
-       AX_C,\r
-       AX_D,\r
-       AX_E,\r
-       AX_F,\r
-       AX_G,\r
-       AX_H,\r
-       AX_I,\r
-       AX_K,\r
-       AX_L,\r
-       AX_M,\r
-       AX_N,\r
-       AX_P,\r
-       AX_Q,\r
-       AX_R,\r
-       AX_S,\r
-       AX_T,\r
-       AX_V,\r
-       AX_W,\r
-       AX_Y,\r
-\r
-       AX_X,   // Any\r
-\r
-       AX_B,   // D or N\r
-       AX_Z,   // E or Q\r
-\r
-       AX_GAP,\r
-       };\r
-const unsigned AX_COUNT = AX_GAP + 1;\r
-\r
-// NX=Nucleotide alphabet with extensions\r
-enum NX\r
-       {\r
-       NX_A,\r
-       NX_C,\r
-       NX_G,\r
-       NX_T,\r
-       NX_U = NX_T,\r
-\r
-    NX_M, // AC\r
-    NX_R, // AG\r
-    NX_W, // AT\r
-    NX_S, // CG\r
-    NX_Y, // CT\r
-    NX_K, // GT\r
-    NX_V, // ACG\r
-    NX_H, // ACT\r
-    NX_D, // AGT\r
-    NX_B, // CGT\r
-    NX_X, // GATC\r
-    NX_N, // GATC\r
-       NX_GAP\r
-       };\r
-const unsigned NX_COUNT = NX_GAP + 1;\r
-\r
-const unsigned MAX_ALPHA = 20;\r
-const unsigned MAX_ALPHA_EX = AX_COUNT;\r
-const unsigned MAX_CHAR = 256;\r
-\r
-extern ALPHA g_Alpha;\r
-extern unsigned g_AlphaSize;\r
-\r
-void SetAlpha(ALPHA Alpha);\r
-char GetWildcardChar();\r
-bool IsNucleo(char c);\r
-bool IsDNA(char c);\r
-bool IsRNA(char c);\r
-\r
-#endif // alpha_h\r