Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / clustsetmsa.h

diff --git a/website/archive/binaries/mac/src/muscle/clustsetmsa.h b/website/archive/binaries/mac/src/muscle/clustsetmsa.h
deleted file mode 100644 (file)
index 659f5c3..0000000
--- a/website/archive/binaries/mac/src/muscle/clustsetmsa.h
+++ /dev/null
@@ -1,55 +0,0 @@
-#ifndef ClustSetMSA_h\r
-#define ClustSetMSA_h\r
-\r
-class MSA;\r
-class Clust;\r
-\r
-#include "clustset.h"\r
-#include "msadist.h"\r
-\r
-// Distance matrix based set.\r
-// Computes distances between leaves, never between\r
-// joined clusters (leaves this to distance matrix method).\r
-class ClustSetMSA : public ClustSet\r
-       {\r
-public:\r
-       ClustSetMSA(const MSA &msa, MSADist &MD) :\r
-               m_ptrMSA(&msa),\r
-               m_ptrMSADist(&MD)\r
-               {\r
-               }\r
-\r
-public:\r
-       virtual unsigned GetLeafCount()\r
-               {\r
-               return m_ptrMSA->GetSeqCount();\r
-               }\r
-       virtual const char *GetLeafName(unsigned uNodeIndex)\r
-               {\r
-               return m_ptrMSA->GetSeqName(uNodeIndex);\r
-               }\r
-       virtual unsigned GetLeafId(unsigned uNodeIndex)\r
-               {\r
-               return m_ptrMSA->GetSeqId(uNodeIndex);\r
-               }\r
-       virtual void JoinNodes(const Clust &C, unsigned uLeftNodeIndex,\r
-         unsigned uRightNodeIndex, unsigned uJoinedNodeIndex,\r
-         double *ptrdLeftLength, double *ptrdRightLength)\r
-               {\r
-               Quit("ClustSetMSA::JoinNodes, should never be called");\r
-               }\r
-       virtual double ComputeDist(const Clust &C, unsigned uNodeIndex1,\r
-         unsigned uNodeIndex2)\r
-               {\r
-               return m_ptrMSADist->ComputeDist(*m_ptrMSA, uNodeIndex1, uNodeIndex2);\r
-               }\r
-\r
-public:\r
-       const MSA &GetMSA();\r
-\r
-private:\r
-       const MSA *m_ptrMSA;\r
-       MSADist *m_ptrMSADist;\r
-       };\r
-\r
-#endif // ClustSetMSA_h\r