Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / dosp.cpp

diff --git a/website/archive/binaries/mac/src/muscle/dosp.cpp b/website/archive/binaries/mac/src/muscle/dosp.cpp
deleted file mode 100644 (file)
index 8a8632e..0000000
--- a/website/archive/binaries/mac/src/muscle/dosp.cpp
+++ /dev/null
@@ -1,60 +0,0 @@
-#include "muscle.h"\r
-#include "textfile.h"\r
-#include "msa.h"\r
-#include "objscore.h"\r
-#include "tree.h"\r
-#include "profile.h"\r
-\r
-void DoSP()\r
-       {\r
-       TextFile f(g_pstrSPFileName);\r
-\r
-       MSA a;\r
-       a.FromFile(f);\r
-\r
-       ALPHA Alpha = ALPHA_Undefined;\r
-       switch (g_SeqType)\r
-               {\r
-       case SEQTYPE_Auto:\r
-               Alpha = a.GuessAlpha();\r
-               break;\r
-\r
-       case SEQTYPE_Protein:\r
-               Alpha = ALPHA_Amino;\r
-               break;\r
-\r
-       case SEQTYPE_DNA:\r
-               Alpha = ALPHA_DNA;\r
-               break;\r
-\r
-       case SEQTYPE_RNA:\r
-               Alpha = ALPHA_RNA;\r
-               break;\r
-\r
-       default:\r
-               Quit("Invalid SeqType");\r
-               }\r
-       SetAlpha(Alpha);\r
-       a.FixAlpha();\r
-\r
-       SetPPScore();\r
-\r
-       const unsigned uSeqCount = a.GetSeqCount();\r
-       if (0 == uSeqCount)\r
-               Quit("No sequences in input file %s", g_pstrSPFileName);\r
-\r
-       MSA::SetIdCount(uSeqCount);\r
-       for (unsigned uSeqIndex = 0; uSeqIndex < uSeqCount; ++uSeqIndex)\r
-               a.SetSeqId(uSeqIndex, uSeqIndex);\r
-\r
-       SetSeqWeightMethod(g_SeqWeight1);\r
-       Tree tree;\r
-       TreeFromMSA(a, tree, g_Cluster2, g_Distance2, g_Root2);\r
-       SetMuscleTree(tree);\r
-       SetMSAWeightsMuscle((MSA &) a);\r
-\r
-       SCORE SP = ObjScoreSP(a);\r
-\r
-       Log("File=%s;SP=%.4g\n", g_pstrSPFileName, SP);\r
-       fprintf(stderr, "File=%s;SP=%.4g\n", g_pstrSPFileName, SP);\r
-       }\r