Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / fasta.cpp

diff --git a/website/archive/binaries/mac/src/muscle/fasta.cpp b/website/archive/binaries/mac/src/muscle/fasta.cpp
deleted file mode 100644 (file)
index 0eee1c5..0000000
--- a/website/archive/binaries/mac/src/muscle/fasta.cpp
+++ /dev/null
@@ -1,56 +0,0 @@
-#include "muscle.h"\r
-#include <stdio.h>\r
-#include <ctype.h>\r
-#include "msa.h"\r
-#include "textfile.h"\r
-\r
-const unsigned FASTA_BLOCK = 60;\r
-\r
-void MSA::FromFASTAFile(TextFile &File)\r
-       {\r
-       Clear();\r
-\r
-       FILE *f = File.GetStdioFile();\r
-       \r
-       unsigned uSeqCount = 0;\r
-       unsigned uColCount = uInsane;\r
-       for (;;)\r
-               {\r
-               char *Label;\r
-               unsigned uSeqLength;\r
-               char *SeqData = GetFastaSeq(f, &uSeqLength, &Label, false);\r
-               if (0 == SeqData)\r
-                       break;\r
-               AppendSeq(SeqData, uSeqLength, Label);\r
-               }\r
-       }\r
-\r
-void MSA::ToFASTAFile(TextFile &File) const\r
-       {\r
-       const unsigned uColCount = GetColCount();\r
-       assert(uColCount > 0);\r
-       const unsigned uLinesPerSeq = (GetColCount() - 1)/FASTA_BLOCK + 1;\r
-       const unsigned uSeqCount = GetSeqCount();\r
-\r
-       for (unsigned uSeqIndex = 0; uSeqIndex < uSeqCount; ++uSeqIndex)\r
-               {\r
-               File.PutString(">");\r
-               File.PutString(GetSeqName(uSeqIndex));\r
-               File.PutString("\n");\r
-\r
-               unsigned n = 0;\r
-               for (unsigned uLine = 0; uLine < uLinesPerSeq; ++uLine)\r
-                       {\r
-                       unsigned uLetters = uColCount - uLine*FASTA_BLOCK;\r
-                       if (uLetters > FASTA_BLOCK)\r
-                               uLetters = FASTA_BLOCK;\r
-                       for (unsigned i = 0; i < uLetters; ++i)\r
-                               {\r
-                               char c = GetChar(uSeqIndex, n);\r
-                               File.PutChar(c);\r
-                               ++n;\r
-                               }\r
-                       File.PutChar('\n');\r
-                       }\r
-               }\r
-       }\r