Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / fastdist.cpp

diff --git a/website/archive/binaries/mac/src/muscle/fastdist.cpp b/website/archive/binaries/mac/src/muscle/fastdist.cpp
deleted file mode 100644 (file)
index a9271c6..0000000
--- a/website/archive/binaries/mac/src/muscle/fastdist.cpp
+++ /dev/null
@@ -1,56 +0,0 @@
-#include "muscle.h"\r
-#include "distfunc.h"\r
-#include "seqvect.h"\r
-\r
-void DistPWScoreDist(const SeqVect &v, DistFunc &DF);\r
-\r
-void DistUnaligned(const SeqVect &v, DISTANCE DistMethod, DistFunc &DF)\r
-       {\r
-       const unsigned uSeqCount = v.Length();\r
-\r
-       switch (DistMethod)\r
-               {\r
-       case DISTANCE_Kmer6_6:\r
-               DistKmer6_6(v, DF);\r
-               break;\r
-\r
-       case DISTANCE_Kmer20_3:\r
-               DistKmer20_3(v, DF);\r
-               break;\r
-\r
-       case DISTANCE_Kmer20_4:\r
-               FastDistKmer(v, DF);\r
-               break;\r
-\r
-       case DISTANCE_Kbit20_3:\r
-               DistKbit20_3(v, DF);\r
-               break;\r
-\r
-       case DISTANCE_Kmer4_6:\r
-               DistKmer4_6(v, DF);\r
-               break;\r
-\r
-       case DISTANCE_PWKimura:\r
-               DistPWKimura(v, DF);\r
-               break;\r
-\r
-       case DISTANCE_PWScoreDist:\r
-               DistPWScoreDist(v, DF);\r
-               break;\r
-\r
-       default:\r
-               Quit("DistUnaligned, unsupported distance method %d", DistMethod);\r
-               }\r
-\r
-//     const char **SeqNames = (const char **) malloc(uSeqCount*sizeof(char *));\r
-       for (unsigned uSeqIndex = 0; uSeqIndex < uSeqCount; ++uSeqIndex)\r
-               {\r
-               const Seq &s = *(v[uSeqIndex]);\r
-\r
-               const char *ptrName = s.GetName();\r
-               unsigned uId = s.GetId();\r
-\r
-               DF.SetName(uSeqIndex, ptrName);\r
-               DF.SetId(uSeqIndex, uId);\r
-               }\r
-       }\r