Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / gapscoredimer.h

diff --git a/website/archive/binaries/mac/src/muscle/gapscoredimer.h b/website/archive/binaries/mac/src/muscle/gapscoredimer.h
deleted file mode 100644 (file)
index 08059ab..0000000
--- a/website/archive/binaries/mac/src/muscle/gapscoredimer.h
+++ /dev/null
@@ -1,69 +0,0 @@
-// source code generated by dimer.py\r
-\r
-static SCORE GapScoreMM(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapOpen*(PPA.m_LL*PPB.m_LG + PPA.m_LG*PPB.m_LL + PPA.m_LG*PPB.m_GL + PPA.m_GL*PPB.m_LG) +\r
-         g_scoreGapExtend*(PPA.m_LL*PPB.m_GG + PPA.m_GG*PPB.m_LL) +\r
-         g_scoreGapAmbig*(PPA.m_GL*PPB.m_GG + PPA.m_GG*PPB.m_GL);\r
-       }\r
-\r
-static SCORE GapScoreMD(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapOpen*(PPA.m_LL*PPB.m_LL + PPA.m_LL*PPB.m_GL + PPA.m_GL*PPB.m_LL + PPA.m_GL*PPB.m_GL) +\r
-         g_scoreGapExtend*(PPA.m_LL*PPB.m_LG + PPA.m_LL*PPB.m_GG) +\r
-         g_scoreGapAmbig*(PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GG);\r
-       }\r
-\r
-static SCORE GapScoreMI(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapOpen*(PPA.m_LL*PPB.m_LL + PPA.m_LL*PPB.m_GL + PPA.m_GL*PPB.m_LL + PPA.m_GL*PPB.m_GL) +\r
-         g_scoreGapExtend*(PPA.m_LG*PPB.m_LL + PPA.m_GG*PPB.m_LL) +\r
-         g_scoreGapAmbig*(PPA.m_LG*PPB.m_GL + PPA.m_GG*PPB.m_GL);\r
-       }\r
-\r
-static SCORE GapScoreDM(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapOpen*(PPA.m_LG*PPB.m_LL + PPA.m_LG*PPB.m_GL) +\r
-         g_scoreGapExtend*(PPA.m_LL*PPB.m_LG + PPA.m_LL*PPB.m_GG) +\r
-         g_scoreGapAmbig*(PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GG + PPA.m_GG*PPB.m_LL + PPA.m_GG*PPB.m_GL);\r
-       }\r
-\r
-static SCORE GapScoreDD(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapExtend*(PPA.m_LL*PPB.m_LL + PPA.m_LL*PPB.m_LG + PPA.m_LL*PPB.m_GL + PPA.m_LL*PPB.m_GG) +\r
-         g_scoreGapAmbig*(PPA.m_GL*PPB.m_LL + PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GL + PPA.m_GL*PPB.m_GG);\r
-       }\r
-\r
-static SCORE GapScoreDI(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapOpen*(PPA.m_LL*PPB.m_LL + PPA.m_LL*PPB.m_GL + PPA.m_GL*PPB.m_LL + PPA.m_GL*PPB.m_GL) +\r
-         g_scoreGapAmbig*(PPA.m_LG*PPB.m_LL + PPA.m_LG*PPB.m_GL + PPA.m_GG*PPB.m_LL + PPA.m_GG*PPB.m_GL);\r
-       }\r
-\r
-static SCORE GapScoreIM(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapOpen*(PPA.m_LL*PPB.m_LG + PPA.m_GL*PPB.m_LG) +\r
-         g_scoreGapExtend*(PPA.m_LG*PPB.m_LL + PPA.m_GG*PPB.m_LL) +\r
-         g_scoreGapAmbig*(PPA.m_LL*PPB.m_GG + PPA.m_LG*PPB.m_GL + PPA.m_GL*PPB.m_GG + PPA.m_GG*PPB.m_GL);\r
-       }\r
-\r
-static SCORE GapScoreID(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapOpen*(PPA.m_LL*PPB.m_LL + PPA.m_LL*PPB.m_GL + PPA.m_GL*PPB.m_LL + PPA.m_GL*PPB.m_GL) +\r
-         g_scoreGapAmbig*(PPA.m_LL*PPB.m_LG + PPA.m_LL*PPB.m_GG + PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GG);\r
-       }\r
-\r
-static SCORE GapScoreII(const ProfPos &PPA, const ProfPos &PPB)\r
-       {\r
-       return\r
-         g_scoreGapExtend*(PPA.m_LL*PPB.m_LL + PPA.m_LG*PPB.m_LL + PPA.m_GL*PPB.m_LL + PPA.m_GG*PPB.m_LL) +\r
-         g_scoreGapAmbig*(PPA.m_LL*PPB.m_GL + PPA.m_LG*PPB.m_GL + PPA.m_GL*PPB.m_GL + PPA.m_GG*PPB.m_GL);\r
-       }\r