+++ /dev/null
-#include "muscle.h"\r
-#include "pwpath.h"\r
-#include "timing.h"\r
-#include "textfile.h"\r
-#include "msa.h"\r
-#include "profile.h"\r
-\r
-#if VER_3_52\r
-\r
-#if TIMING\r
-TICKS g_ticksDP = 0;\r
-#endif\r
-\r
-SCORE GlobalAlign(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB,\r
- unsigned uLengthB, PWPath &Path)\r
- {\r
-#if TIMING\r
- TICKS t1 = GetClockTicks();\r
-#endif\r
- SCORE Score = 0;\r
- if (g_bDiags)\r
- Score = GlobalAlignDiags(PA, uLengthA, PB, uLengthB, Path);\r
- else\r
- Score = GlobalAlignNoDiags(PA, uLengthA, PB, uLengthB, Path);\r
-#if TIMING\r
- TICKS t2 = GetClockTicks();\r
- g_ticksDP += (t2 - t1);\r
-#endif\r
- return Score;\r
- }\r
-\r
-SCORE GlobalAlignNoDiags(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB,\r
- unsigned uLengthB, PWPath &Path)\r
- {\r
- if (g_bDimer)\r
- return GlobalAlignDimer(PA, uLengthA, PB, uLengthB, Path);\r
-\r
- switch (g_PPScore)\r
- {\r
- case PPSCORE_LE:\r
- return GlobalAlignLE(PA, uLengthA, PB, uLengthB, Path);\r
-\r
- case PPSCORE_SP:\r
- case PPSCORE_SV:\r
- return GlobalAlignSP(PA, uLengthA, PB, uLengthB, Path);\r
-\r
- case PPSCORE_SPN:\r
- return GlobalAlignSPN(PA, uLengthA, PB, uLengthB, Path);\r
- }\r
-\r
- Quit("Invalid PP score (GlobalAlignNoDiags)");\r
- return 0;\r
- }\r
-\r
-#endif // VER_3_52\r