Mac binaries

[jabaws.git] / website / archive / binaries / mac / src / muscle / glbalign352.cpp

diff --git a/website/archive/binaries/mac/src/muscle/glbalign352.cpp b/website/archive/binaries/mac/src/muscle/glbalign352.cpp
new file mode 100644 (file)
index 0000000..6305c7c
--- /dev/null
+++ b/website/archive/binaries/mac/src/muscle/glbalign352.cpp
@@ -0,0 +1,55 @@
+#include "muscle.h"\r
+#include "pwpath.h"\r
+#include "timing.h"\r
+#include "textfile.h"\r
+#include "msa.h"\r
+#include "profile.h"\r
+\r
+#if    VER_3_52\r
+\r
+#if    TIMING\r
+TICKS g_ticksDP = 0;\r
+#endif\r
+\r
+SCORE GlobalAlign(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB,\r
+  unsigned uLengthB, PWPath &Path)\r
+       {\r
+#if    TIMING\r
+       TICKS t1 = GetClockTicks();\r
+#endif\r
+       SCORE Score = 0;\r
+       if (g_bDiags)\r
+               Score = GlobalAlignDiags(PA, uLengthA, PB, uLengthB, Path);\r
+       else\r
+               Score = GlobalAlignNoDiags(PA, uLengthA, PB, uLengthB, Path);\r
+#if    TIMING\r
+       TICKS t2 = GetClockTicks();\r
+       g_ticksDP += (t2 - t1);\r
+#endif\r
+       return Score;\r
+       }\r
+\r
+SCORE GlobalAlignNoDiags(const ProfPos *PA, unsigned uLengthA, const ProfPos *PB,\r
+  unsigned uLengthB, PWPath &Path)\r
+       {\r
+       if (g_bDimer)\r
+               return GlobalAlignDimer(PA, uLengthA, PB, uLengthB, Path);\r
+\r
+       switch (g_PPScore)\r
+               {\r
+       case PPSCORE_LE:\r
+               return GlobalAlignLE(PA, uLengthA, PB, uLengthB, Path);\r
+\r
+       case PPSCORE_SP:\r
+       case PPSCORE_SV:\r
+               return GlobalAlignSP(PA, uLengthA, PB, uLengthB, Path);\r
+\r
+       case PPSCORE_SPN:\r
+               return GlobalAlignSPN(PA, uLengthA, PB, uLengthB, Path);\r
+               }\r
+\r
+       Quit("Invalid PP score (GlobalAlignNoDiags)");\r
+       return 0;\r
+       }\r
+\r
+#endif // VER_3_52\r