Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / msadist.h

diff --git a/website/archive/binaries/mac/src/muscle/msadist.h b/website/archive/binaries/mac/src/muscle/msadist.h
deleted file mode 100644 (file)
index 8dcafcd..0000000
--- a/website/archive/binaries/mac/src/muscle/msadist.h
+++ /dev/null
@@ -1,39 +0,0 @@
-#ifndef MSADist_h\r
-#define MSADist_h\r
-\r
-#include <math.h>\r
-\r
-double GetScoreDist(const MSA &msa, unsigned SeqIndex1, unsigned SeqIndex2);\r
-\r
-class MSADist\r
-       {\r
-public:\r
-       MSADist(DISTANCE Distance)\r
-               {\r
-               m_Distance = Distance;\r
-               }\r
-\r
-       double ComputeDist(const MSA &msa, unsigned uSeqIndex1, unsigned uSeqIndex2)\r
-               {\r
-               if (m_Distance == DISTANCE_ScoreDist)\r
-                       return GetScoreDist(msa, uSeqIndex1, uSeqIndex2);\r
-\r
-               double dPctId = msa.GetPctIdentityPair(uSeqIndex1, uSeqIndex2);\r
-               switch(m_Distance)\r
-                       {\r
-               case DISTANCE_PctIdKimura:\r
-                       return KimuraDist(dPctId);\r
-               case DISTANCE_PctIdLog:\r
-                       if (dPctId < 0.05)\r
-                               dPctId = 0.05;\r
-                       return -log(dPctId);\r
-                       }\r
-               Quit("MSADist::ComputeDist, invalid DISTANCE_%u", m_Distance);\r
-               return 0;\r
-               }\r
-\r
-private:\r
-       DISTANCE m_Distance;\r
-       };\r
-\r
-#endif // MSADist_h\r