Delete unneeded directory
[jabaws.git] / website / archive / binaries / mac / src / muscle / msadistmafft.h
diff --git a/website/archive/binaries/mac/src/muscle/msadistmafft.h b/website/archive/binaries/mac/src/muscle/msadistmafft.h
deleted file mode 100644 (file)
index 56772e1..0000000
+++ /dev/null
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-#ifndef MSADistMAFFT_h\r
-#define MSADistMAFFT_h\r
-\r
-#include "msadist.h"\r
-#include <math.h>\r
-\r
-extern double PctIdToMAFFTDist(double dPctId);\r
-\r
-class MSADistMAFFT : public MSADist\r
-       {\r
-public:\r
-       virtual double ComputeDist(const MSA &msa, unsigned uSeqIndex1,\r
-         unsigned uSeqIndex2)\r
-               {\r
-               double dPctId = msa.GetPctIdentityPair(uSeqIndex1, uSeqIndex2);\r
-               //if (dPctId < 0.05)\r
-               //      dPctId = 0.05;\r
-               //double dDist = -log(dPctId);\r
-               //return dDist;\r
-               return PctIdToMAFFTDist(dPctId);\r
-               }\r
-       };\r
-\r
-#endif // MSADistMAFFT_h\r