--- /dev/null
+<?xml version="1.0" encoding = "Windows-1252"?>\r
+<VisualStudioProject\r
+ ProjectType="Visual C++"\r
+ Version="7.00"\r
+ Name="muscle21"\r
+ ProjectGUID="{57FBAB99-B961-4B38-B846-CA26D63384F2}"\r
+ Keyword="Win32Proj">\r
+ <Platforms>\r
+ <Platform\r
+ Name="Win32"/>\r
+ </Platforms>\r
+ <Configurations>\r
+ <Configuration\r
+ Name="Debug|Win32"\r
+ OutputDirectory="Debug"\r
+ IntermediateDirectory="Debug"\r
+ ConfigurationType="1"\r
+ CharacterSet="2">\r
+ <Tool\r
+ Name="VCCLCompilerTool"\r
+ Optimization="0"\r
+ PreprocessorDefinitions="WIN32;_DEBUG;_CONSOLE;_WIN32_WINNT=0x0400"\r
+ MinimalRebuild="TRUE"\r
+ BasicRuntimeChecks="3"\r
+ RuntimeLibrary="5"\r
+ UsePrecompiledHeader="0"\r
+ BrowseInformation="1"\r
+ WarningLevel="3"\r
+ Detect64BitPortabilityProblems="TRUE"\r
+ DebugInformationFormat="4"/>\r
+ <Tool\r
+ Name="VCCustomBuildTool"/>\r
+ <Tool\r
+ Name="VCLinkerTool"\r
+ AdditionalDependencies="psapi.lib"\r
+ OutputFile="$(OutDir)/muscle21.exe"\r
+ LinkIncremental="2"\r
+ GenerateDebugInformation="TRUE"\r
+ ProgramDatabaseFile="$(OutDir)/muscle.pdb"\r
+ SubSystem="1"\r
+ TargetMachine="1"/>\r
+ <Tool\r
+ Name="VCMIDLTool"/>\r
+ <Tool\r
+ Name="VCPostBuildEventTool"/>\r
+ <Tool\r
+ Name="VCPreBuildEventTool"/>\r
+ <Tool\r
+ Name="VCPreLinkEventTool"/>\r
+ <Tool\r
+ Name="VCResourceCompilerTool"/>\r
+ <Tool\r
+ Name="VCWebServiceProxyGeneratorTool"/>\r
+ <Tool\r
+ Name="VCWebDeploymentTool"/>\r
+ </Configuration>\r
+ <Configuration\r
+ Name="Release|Win32"\r
+ OutputDirectory="Release"\r
+ IntermediateDirectory="Release"\r
+ ConfigurationType="1"\r
+ CharacterSet="2">\r
+ <Tool\r
+ Name="VCCLCompilerTool"\r
+ Optimization="2"\r
+ InlineFunctionExpansion="1"\r
+ OmitFramePointers="TRUE"\r
+ PreprocessorDefinitions="WIN32;NDEBUG;_CONSOLE;_WIN32_WINNT=0x0400"\r
+ StringPooling="TRUE"\r
+ RuntimeLibrary="4"\r
+ EnableFunctionLevelLinking="TRUE"\r
+ UsePrecompiledHeader="0"\r
+ BrowseInformation="1"\r
+ WarningLevel="3"\r
+ Detect64BitPortabilityProblems="TRUE"\r
+ DebugInformationFormat="3"/>\r
+ <Tool\r
+ Name="VCCustomBuildTool"/>\r
+ <Tool\r
+ Name="VCLinkerTool"\r
+ AdditionalDependencies="psapi.lib"\r
+ OutputFile="$(OutDir)/muscle21.exe"\r
+ LinkIncremental="1"\r
+ GenerateDebugInformation="TRUE"\r
+ SubSystem="1"\r
+ OptimizeReferences="2"\r
+ EnableCOMDATFolding="2"\r
+ TargetMachine="1"/>\r
+ <Tool\r
+ Name="VCMIDLTool"/>\r
+ <Tool\r
+ Name="VCPostBuildEventTool"/>\r
+ <Tool\r
+ Name="VCPreBuildEventTool"/>\r
+ <Tool\r
+ Name="VCPreLinkEventTool"/>\r
+ <Tool\r
+ Name="VCResourceCompilerTool"/>\r
+ <Tool\r
+ Name="VCWebServiceProxyGeneratorTool"/>\r
+ <Tool\r
+ Name="VCWebDeploymentTool"/>\r
+ </Configuration>\r
+ </Configurations>\r
+ <Files>\r
+ <Filter\r
+ Name="Source Files"\r
+ Filter="cpp;c;cxx;def;odl;idl;hpj;bat;asm">\r
+ <File\r
+ RelativePath="aligngivenpath.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="aligntwoprofs.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="alpha.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="clust.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="cluster.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="clwwt.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="cons.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="diaglist.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="difftreese.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="distcalc.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="distfunc.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="domuscle.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="dpreglist.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="edgelist.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="enumopts.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="enumtostr.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="estring.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="fasta.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="fastclust.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="fastdist.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="fastdistmafft.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="fastscorepath2.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="finddiags.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="gatest.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="glbalign.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="glbaligndiag.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="glbalignla.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="globals.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="globalslinux.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="globalswin32.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="intmath.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="main.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="makerootmsa.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="msa.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="msa2.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="msadistkimura.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="msf.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="onexception.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="options.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="params.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="phy.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="phy2.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="phy3.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="phy4.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="phyfromclust.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="phyfromfile.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="phytofile.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="posgap.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="profilefrommsa.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="progalign.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="progress.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="pwpath.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="realigndiffse.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="refinetreee.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="savebest.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="scoremx.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="seq.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="seqvect.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="setblosumweights.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="setgscweights.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="setnewhandler.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="textfile.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="traceback.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="tracebackopt.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="treefrommsa.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="typetostr.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="upgma2.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="usage.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="validateids.cpp">\r
+ </File>\r
+ <File\r
+ RelativePath="vtml2.cpp">\r
+ </File>\r
+ </Filter>\r
+ <Filter\r
+ Name="Header Files"\r
+ Filter="h;hpp;hxx;hm;inl;inc">\r
+ <File\r
+ RelativePath="alpha.h">\r
+ </File>\r
+ <File\r
+ RelativePath="clust.h">\r
+ </File>\r
+ <File\r
+ RelativePath="cluster.h">\r
+ </File>\r
+ <File\r
+ RelativePath="clustset.h">\r
+ </File>\r
+ <File\r
+ RelativePath="clustsetdf.h">\r
+ </File>\r
+ <File\r
+ RelativePath="clustsetmsa.h">\r
+ </File>\r
+ <File\r
+ RelativePath="consts.h">\r
+ </File>\r
+ <File\r
+ RelativePath="diaglist.h">\r
+ </File>\r
+ <File\r
+ RelativePath="distcalc.h">\r
+ </File>\r
+ <File\r
+ RelativePath="distfunc.h">\r
+ </File>\r
+ <File\r
+ RelativePath="dpregionlist.h">\r
+ </File>\r
+ <File\r
+ RelativePath="dpreglist.h">\r
+ </File>\r
+ <File\r
+ RelativePath="edgelist.h">\r
+ </File>\r
+ <File\r
+ RelativePath="enumopts.h">\r
+ </File>\r
+ <File\r
+ RelativePath="enums.h">\r
+ </File>\r
+ <File\r
+ RelativePath="estring.h">\r
+ </File>\r
+ <File\r
+ RelativePath="gonnet.h">\r
+ </File>\r
+ <File\r
+ RelativePath="intmath.h">\r
+ </File>\r
+ <File\r
+ RelativePath="msa.h">\r
+ </File>\r
+ <File\r
+ RelativePath="msadist.h">\r
+ </File>\r
+ <File\r
+ RelativePath="muscle.h">\r
+ </File>\r
+ <File\r
+ RelativePath="objscore.h">\r
+ </File>\r
+ <File\r
+ RelativePath="params.h">\r
+ </File>\r
+ <File\r
+ RelativePath="profile.h">\r
+ </File>\r
+ <File\r
+ RelativePath="scorehistory.h">\r
+ </File>\r
+ <File\r
+ RelativePath="seq.h">\r
+ </File>\r
+ <File\r
+ RelativePath="seqvect.h">\r
+ </File>\r
+ <File\r
+ RelativePath="textfile.h">\r
+ </File>\r
+ <File\r
+ RelativePath="timing.h">\r
+ </File>\r
+ <File\r
+ RelativePath="tree.h">\r
+ </File>\r
+ <File\r
+ RelativePath="types.h">\r
+ </File>\r
+ <File\r
+ RelativePath="unixio.h">\r
+ </File>\r
+ </Filter>\r
+ </Files>\r
+ <Globals>\r
+ </Globals>\r
+</VisualStudioProject>\r