+++ /dev/null
-#include "muscle.h"\r
-\r
-// BLASTZ default parameters\r
-// open 400, extend 30, matrix as below\r
-\r
-const float NUC_EXTEND = 30;\r
-const float NUC_SP_CENTER = 2*NUC_EXTEND;\r
-\r
-#define v(x) ((float) x + NUC_SP_CENTER)\r
-#define ROW(A, C, G, T) \\r
- { v(A), v(C), v(G), v(T) },\r
-\r
-float NUC_SP[32][32] =\r
- {\r
-// A C G T\r
-ROW( 91, -114, -31, -123) // A\r
-\r
-ROW( -114, 100, -125, -31) // C\r
-\r
-ROW( -31, -125, 100, -114) // G\r
-\r
-ROW( -123, -31, -114, 91) // T\r
- };\r