Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / profdb.cpp

diff --git a/website/archive/binaries/mac/src/muscle/profdb.cpp b/website/archive/binaries/mac/src/muscle/profdb.cpp
deleted file mode 100644 (file)
index f1b6595..0000000
--- a/website/archive/binaries/mac/src/muscle/profdb.cpp
+++ /dev/null
@@ -1,54 +0,0 @@
-#include "muscle.h"\r
-#include "textfile.h"\r
-#include "seqvect.h"\r
-#include "distfunc.h"\r
-#include "msa.h"\r
-#include "tree.h"\r
-#include "clust.h"\r
-#include "profile.h"\r
-#include "clustsetmsa.h"\r
-\r
-void ProfDB()\r
-       {\r
-       SetOutputFileName(g_pstrOutFileName);\r
-       SetInputFileName(g_pstrFileName2);\r
-       SetStartTime();\r
-\r
-       TextFile file1(g_pstrFileName1);\r
-       TextFile file2(g_pstrFileName2);\r
-\r
-       SetMaxIters(g_uMaxIters);\r
-       SetSeqWeightMethod(g_SeqWeight1);\r
-\r
-       TextFile fileIn(g_pstrFileName1);\r
-       MSA msa1;\r
-       msa1.FromFile(fileIn);\r
-\r
-       const unsigned uSeqCount1 = msa1.GetSeqCount();\r
-       if (0 == uSeqCount1)\r
-               Quit("No sequences in input alignment");\r
-\r
-       SeqVect v;\r
-       v.FromFASTAFile(file2);\r
-       const unsigned uSeqCount2 = v.Length();\r
-       if (0 == uSeqCount2)\r
-               Quit("No sequences in input alignment");\r
-\r
-       MSA::SetIdCount(uSeqCount1 + uSeqCount2);\r
-       SetProgressDesc("Align sequence database to profile");\r
-       for (unsigned uSeqIndex = 0; uSeqIndex < uSeqCount2; ++uSeqIndex)\r
-               {\r
-               Progress(uSeqIndex, uSeqCount2);\r
-               Seq &s = *(v[uSeqIndex]);\r
-               s.SetId(0);\r
-               MSA msaTmp;\r
-               msaTmp.FromSeq(s);\r
-               MSA msaOut;\r
-               ProfileProfile(msa1, msaTmp, msaOut);\r
-               msa1.Copy(msaOut);\r
-               }\r
-       ProgressStepsDone();\r
-\r
-       TextFile fileOut(g_pstrOutFileName, true);\r
-       msa1.ToFile(fileOut);\r
-       }\r