Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / progress.cpp

diff --git a/website/archive/binaries/mac/src/muscle/progress.cpp b/website/archive/binaries/mac/src/muscle/progress.cpp
deleted file mode 100644 (file)
index a7fa01f..0000000
--- a/website/archive/binaries/mac/src/muscle/progress.cpp
+++ /dev/null
@@ -1,172 +0,0 @@
-#include "muscle.h"\r
-#include <stdio.h>\r
-#include <time.h>\r
-\r
-// Functions that provide visible feedback to the user\r
-// that progress is being made.\r
-\r
-static unsigned g_uIter = 0;           // Main MUSCLE iteration 1, 2..\r
-static unsigned g_uLocalMaxIters = 0;  // Max iters\r
-static FILE *g_fProgress = stderr;     // Default to standard error\r
-static char g_strFileName[32];         // File name\r
-static time_t g_tLocalStart;                           // Start time\r
-static char g_strDesc[32];                     // Description\r
-static bool g_bWipeDesc = false;\r
-static int g_nPrevDescLength;\r
-static unsigned g_uTotalSteps;\r
-\r
-const char *ElapsedTimeAsStr()\r
-       {\r
-       time_t Now = time(0);\r
-       unsigned long ElapsedSecs = (unsigned long) (Now - g_tLocalStart);\r
-       return SecsToStr(ElapsedSecs);\r
-       }\r
-\r
-const char *MemToStr(double MB)\r
-       {\r
-       if (MB < 0)\r
-               return "";\r
-\r
-       static char Str[16];\r
-       static double MaxMB = 0;\r
-       static double RAMMB = 0;\r
-\r
-       if (RAMMB == 0)\r
-               RAMMB = GetRAMSizeMB();\r
-\r
-       if (MB > MaxMB)\r
-               MaxMB = MB;\r
-       double Pct = (MaxMB*100.0)/RAMMB;\r
-       if (Pct > 100)\r
-               Pct = 100;\r
-       sprintf(Str, "%.0f MB(%.0f%%)", MaxMB, Pct);\r
-       return Str;\r
-       }\r
-\r
-void SetInputFileName(const char *pstrFileName)\r
-       {\r
-       NameFromPath(pstrFileName, g_strFileName, sizeof(g_strFileName));\r
-       }\r
-\r
-void SetSeqStats(unsigned uSeqCount, unsigned uMaxL, unsigned uAvgL)\r
-       {\r
-       if (g_bQuiet)\r
-               return;\r
-\r
-       fprintf(g_fProgress, "%s %u seqs, max length %u, avg  length %u\n",\r
-         g_strFileName, uSeqCount, uMaxL, uAvgL);\r
-       if (g_bVerbose)\r
-               Log("%u seqs, max length %u, avg  length %u\n",\r
-                 uSeqCount, uMaxL, uAvgL);\r
-       }\r
-\r
-void SetStartTime()\r
-       {\r
-       time(&g_tLocalStart);\r
-       }\r
-\r
-unsigned long GetStartTime()\r
-       {\r
-       return (unsigned long) g_tLocalStart;\r
-       }\r
-\r
-void SetIter(unsigned uIter)\r
-       {\r
-       g_uIter = uIter;\r
-       }\r
-\r
-void IncIter()\r
-       {\r
-       ++g_uIter;\r
-       }\r
-\r
-void SetMaxIters(unsigned uMaxIters)\r
-       {\r
-       g_uLocalMaxIters = uMaxIters;\r
-       }\r
-\r
-void SetProgressDesc(const char szDesc[])\r
-       {\r
-       strncpy(g_strDesc, szDesc, sizeof(g_strDesc));\r
-       g_strDesc[sizeof(g_strDesc) - 1] = 0;\r
-       }\r
-\r
-static void Wipe(int n)\r
-       {\r
-       for (int i = 0; i < n; ++i)\r
-               fprintf(g_fProgress, " ");\r
-       }\r
-\r
-void Progress(const char *szFormat, ...)\r
-       {\r
-       CheckMaxTime();\r
-\r
-       if (g_bQuiet)\r
-               return;\r
-\r
-       double MB = GetMemUseMB();\r
-\r
-       char szStr[4096];\r
-       va_list ArgList;\r
-       va_start(ArgList, szFormat);\r
-       vsprintf(szStr, szFormat, ArgList);\r
-\r
-       fprintf(g_fProgress, "%8.8s  %12s  %s",\r
-         ElapsedTimeAsStr(),\r
-         MemToStr(MB),\r
-         szStr);\r
-\r
-       fprintf(g_fProgress, "\n");\r
-       fflush(g_fProgress);\r
-       }\r
-\r
-void Progress(unsigned uStep, unsigned uTotalSteps)\r
-       {\r
-       CheckMaxTime();\r
-\r
-       if (g_bQuiet)\r
-               return;\r
-\r
-       double dPct = ((uStep + 1)*100.0)/uTotalSteps;\r
-       double MB = GetMemUseMB();\r
-       fprintf(g_fProgress, "%8.8s  %12s  Iter %3u  %6.2f%%  %s",\r
-         ElapsedTimeAsStr(),\r
-         MemToStr(MB),\r
-         g_uIter,\r
-         dPct,\r
-         g_strDesc);\r
-\r
-       if (g_bWipeDesc)\r
-               {\r
-               int n = g_nPrevDescLength - (int) strlen(g_strDesc);\r
-               Wipe(n);\r
-               g_bWipeDesc = false;\r
-               }\r
-\r
-       fprintf(g_fProgress, "\r");\r
-\r
-       g_uTotalSteps = uTotalSteps;\r
-       }\r
-\r
-void ProgressStepsDone()\r
-       {\r
-       CheckMaxTime();\r
-\r
-       if (g_bVerbose)\r
-               {\r
-               double MB = GetMemUseMB();\r
-               Log("Elapsed time %8.8s  Peak memory use %12s  Iteration %3u %s\n",\r
-                ElapsedTimeAsStr(),\r
-                MemToStr(MB),\r
-                g_uIter,\r
-                g_strDesc);\r
-               }\r
-\r
-       if (g_bQuiet)\r
-               return;\r
-\r
-       Progress(g_uTotalSteps - 1, g_uTotalSteps);\r
-       fprintf(g_fProgress, "\n");\r
-       g_bWipeDesc = true;\r
-       g_nPrevDescLength = (int) strlen(g_strDesc);\r
-       }\r