Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / savebest.cpp

diff --git a/website/archive/binaries/mac/src/muscle/savebest.cpp b/website/archive/binaries/mac/src/muscle/savebest.cpp
deleted file mode 100644 (file)
index 24757f2..0000000
--- a/website/archive/binaries/mac/src/muscle/savebest.cpp
+++ /dev/null
@@ -1,66 +0,0 @@
-#include "muscle.h"\r
-#include "msa.h"\r
-#include "textfile.h"\r
-#include <time.h>\r
-\r
-MSA *ptrBestMSA;\r
-static const char *pstrOutputFileName;\r
-\r
-void SetOutputFileName(const char *out)\r
-       {\r
-       pstrOutputFileName = out;\r
-       }\r
-\r
-void SetCurrentAlignment(MSA &msa)\r
-       {\r
-       ptrBestMSA = &msa;\r
-       }\r
-\r
-void SaveCurrentAlignment()\r
-       {\r
-       static bool bCalled = false;\r
-       if (bCalled)\r
-               {\r
-               fprintf(stderr,\r
-                 "\nRecursive call to SaveCurrentAlignment, giving up attempt to save.\n");\r
-               exit(EXIT_FatalError);\r
-               }\r
-\r
-       if (0 == ptrBestMSA)\r
-               {\r
-               fprintf(stderr, "\nAlignment not completed, cannot save.\n");\r
-               Log("Alignment not completed, cannot save.\n");\r
-               exit(EXIT_FatalError);\r
-               }\r
-\r
-       if (0 == pstrOutputFileName)\r
-               {\r
-               fprintf(stderr, "\nOutput file name not specified, cannot save.\n");\r
-               exit(EXIT_FatalError);\r
-               }\r
-\r
-       fprintf(stderr, "\nSaving current alignment ...\n");\r
-\r
-       TextFile fileOut(pstrOutputFileName, true);\r
-       ptrBestMSA->ToFASTAFile(fileOut);\r
-\r
-       fprintf(stderr, "Current alignment saved to \"%s\".\n", pstrOutputFileName);\r
-       Log("Current alignment saved to \"%s\".\n", pstrOutputFileName);\r
-       }\r
-\r
-void CheckMaxTime()\r
-       {\r
-       if (0 == g_ulMaxSecs)\r
-               return;\r
-\r
-       time_t Now = time(0);\r
-       time_t ElapsedSecs = Now - GetStartTime();\r
-       if (ElapsedSecs <= (time_t) g_ulMaxSecs)\r
-               return;\r
-\r
-       Log("Max time %s exceeded, elapsed seconds = %ul\n",\r
-         MaxSecsToStr(), ElapsedSecs);\r
-\r
-       SaveCurrentAlignment();\r
-       exit(EXIT_Success);\r
-       }\r