Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / scorehistory.cpp

diff --git a/website/archive/binaries/mac/src/muscle/scorehistory.cpp b/website/archive/binaries/mac/src/muscle/scorehistory.cpp
deleted file mode 100644 (file)
index 7345a45..0000000
--- a/website/archive/binaries/mac/src/muscle/scorehistory.cpp
+++ /dev/null
@@ -1,101 +0,0 @@
-#include "muscle.h"\r
-#include "scorehistory.h"\r
-#include <stdio.h>\r
-\r
-#define TRACE  0\r
-\r
-ScoreHistory::ScoreHistory(unsigned uIters, unsigned uNodeCount)\r
-       {\r
-       m_uNodeCount = uNodeCount;\r
-       m_uIters = uIters;\r
-\r
-       m_Score = new SCORE *[uIters];\r
-       m_bScoreSet = new bool *[uIters];\r
-       for (unsigned n = 0; n < uIters; ++n)\r
-               {\r
-               m_Score[n] = new SCORE[uNodeCount*2];\r
-               m_bScoreSet[n] = new bool[uNodeCount*2];\r
-               memset(m_bScoreSet[n], 0, uNodeCount*2*sizeof(bool));\r
-               }\r
-       }\r
-\r
-ScoreHistory::~ScoreHistory()\r
-       {\r
-       for (unsigned n = 0; n < m_uIters; ++n)\r
-               {\r
-               delete[] m_Score[n];\r
-               delete[] m_bScoreSet[n];\r
-               }\r
-       delete[] m_Score;\r
-       delete[] m_bScoreSet;\r
-       }\r
-\r
-bool ScoreHistory::SetScore(unsigned uIter, unsigned uNodeIndex, bool bRight, SCORE Score)\r
-       {\r
-#if    TRACE\r
-       Log("ScoreHistory::SetScore(Iter=%u Node=%u Right=%d Score=%g)\n",\r
-         uIter, uNodeIndex, bRight, Score);\r
-#endif\r
-       if (uIter >= m_uIters)\r
-               Quit("ScoreHistory::SetScore-1");\r
-       if (uNodeIndex >= m_uNodeCount)\r
-               Quit("ScoreHistory::SetScore-2");\r
-\r
-       const unsigned uIndex = uNodeIndex*2 + bRight;\r
-       for (unsigned n = 1; n < uIter; ++n)\r
-               {\r
-               const unsigned uPrevIter = n - 1;\r
-               if (!m_bScoreSet[uPrevIter][uIndex])\r
-                       {\r
-                       LogMe();\r
-                       Quit("ScoreHistory::SetScore-3");\r
-                       }\r
-               if (m_Score[uPrevIter][uIndex] == Score)\r
-                       {\r
-                       ProgressStepsDone();\r
-#if    TRACE\r
-                       Log("Oscillating\n");\r
-#endif\r
-                       return true;\r
-                       }\r
-               }\r
-       m_Score[uIter][uIndex] = Score;\r
-       m_bScoreSet[uIter][uIndex] = true;\r
-       return false;\r
-       }\r
-\r
-void ScoreHistory::LogMe() const\r
-       {\r
-       Log("ScoreHistory\n");\r
-       Log("Iter  Node  Right      Score\n");\r
-       Log("----  ----  -----  ---------\n");\r
-       for (unsigned uIter = 0; uIter < m_uIters; ++uIter)\r
-               {\r
-               bool bAnySet = false;\r
-               for (unsigned n = 0; n < m_uNodeCount*2; ++n)\r
-                       if (m_bScoreSet[uIter][n])\r
-                               {\r
-                               bAnySet = true;\r
-                               break;\r
-                               }\r
-               if (!bAnySet)\r
-                       return;\r
-               for (unsigned uNodeIndex = 0; uNodeIndex < m_uNodeCount; ++uNodeIndex)\r
-                       {\r
-                       const unsigned uBase = 2*uNodeIndex;\r
-                       if (m_bScoreSet[uIter][uBase])\r
-                               Log("%4u  %4u         F  %9.3f\n", uIter, uNodeIndex, m_Score[uIter][uBase]);\r
-                       if (m_bScoreSet[uIter][uBase+1])\r
-                               Log("%4u  %4u         T  %9.3f\n", uIter, uNodeIndex, m_Score[uIter][uBase+1]);\r
-                       }\r
-               }\r
-       }\r
-\r
-SCORE ScoreHistory::GetScore(unsigned uIter, unsigned uNodeIndex,\r
-  bool bReverse, bool bRight) const\r
-       {\r
-       const unsigned uIndex = uNodeIndex*2 + bRight;\r
-       if (!m_bScoreSet[uIter][uIndex])\r
-               Quit("ScoreHistory::GetScore");\r
-       return m_Score[uIter][uIndex];\r
-       }\r