Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / subfams.cpp

diff --git a/website/archive/binaries/mac/src/muscle/subfams.cpp b/website/archive/binaries/mac/src/muscle/subfams.cpp
deleted file mode 100644 (file)
index 62cad34..0000000
--- a/website/archive/binaries/mac/src/muscle/subfams.cpp
+++ /dev/null
@@ -1,65 +0,0 @@
-#include "muscle.h"\r
-#include "distfunc.h"\r
-\r
-const float INFINITY = float(1e29);\r
-const unsigned NILL = uInsane;\r
-\r
-static float *ShortestPathEstimate;\r
-static unsigned *Predecessor;\r
-\r
-static void GetMostDistantPair(DistFunc &DF, unsigned *ptrIndex1, unsigned *ptrIndex2)\r
-       {\r
-       const unsigned uNodeCount = DF.GetCount();\r
-       if (uNodeCount < 2)\r
-               Quit("GetMostDistantPair: < 2 seqs");\r
-\r
-       float MaxDist = -1; \r
-       unsigned Index1 = uInsane;\r
-       unsigned Index2 = uInsane;\r
-       for (unsigned i = 0; i < uNodeCount; ++i)\r
-               {\r
-               for (unsigned j = i + 1; j < uNodeCount; ++j)\r
-                       {\r
-                       float d = DF.GetDist(i, j);\r
-                       if (d > MaxDist)\r
-                               {\r
-                               MaxDist = d;\r
-                               Index1 = i;\r
-                               Index2 = j;\r
-                               }\r
-                       }\r
-               }\r
-\r
-       assert(Index1 != uInsane);\r
-       assert(Index2 != uInsane);\r
-\r
-       *ptrIndex1 = Index1;\r
-       *ptrIndex2 = Index2;\r
-       }\r
-\r
-static void InitializeSingleSource(DistFunc &DF, unsigned uIndex)\r
-       {\r
-       const unsigned uNodeCount = 0;\r
-\r
-       for (unsigned i = 0; i < uNodeCount; ++i)\r
-               {\r
-               ShortestPathEstimate[i] = INFINITY;\r
-               Predecessor[i] = NILL;\r
-               }\r
-       ShortestPathEstimate[uIndex] = 0;\r
-       }\r
-\r
-static void Relax(DistFunc &DF, unsigned u, unsigned v)\r
-       {\r
-       float w = DF.GetDist(u, v);\r
-       float d = ShortestPathEstimate[u] + w;\r
-       if (ShortestPathEstimate[v] > d)\r
-               {\r
-               ShortestPathEstimate[v] = d;\r
-               Predecessor[v] = u;\r
-               }\r
-       }\r
-\r
-void ShortestPath(DistFunc &DF, unsigned uIndex)\r
-       {\r
-       }\r