Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / types.h

diff --git a/website/archive/binaries/mac/src/muscle/types.h b/website/archive/binaries/mac/src/muscle/types.h
deleted file mode 100644 (file)
index b93eb84..0000000
--- a/website/archive/binaries/mac/src/muscle/types.h
+++ /dev/null
@@ -1,117 +0,0 @@
-#ifndef types_h\r
-#define types_h\r
-\r
-typedef unsigned char byte;\r
-typedef unsigned short ushort;\r
-\r
-typedef float SCOREMATRIX[32][32];\r
-typedef SCOREMATRIX *PTR_SCOREMATRIX;\r
-\r
-class MSA;\r
-class Seq;\r
-class ClusterTree;\r
-class DistFunc;\r
-class TextFile;\r
-class PWPath;\r
-class Tree;\r
-class SeqVect;\r
-class DistCalc;\r
-\r
-struct ProgNode;\r
-struct ProfPos;\r
-\r
-#if    SINGLE_AFFINE\r
-// Compress M, D and I trace-back matrices into 4 bits\r
-enum\r
-       {\r
-       BIT_MM = 0x00,\r
-       BIT_DM = 0x01,\r
-       BIT_IM = 0x02,\r
-       BIT_xM = 0x03,\r
-\r
-       BIT_DD = 0x00,\r
-       BIT_MD = 0x04,\r
-       //  ID not allowed\r
-       BIT_xD = 0x04,\r
-\r
-       BIT_II = 0x00,\r
-       BIT_MI = 0x08,\r
-       //  DI not allowed\r
-       BIT_xI = 0x08,\r
-       };\r
-\r
-#endif\r
-\r
-#if    DOUBLE_AFFINE\r
-// Compress M, D, E, I and J trace-back matrices into 7 bits\r
-enum\r
-       {\r
-       BIT_MM = 0x00,\r
-       BIT_DM = 0x01,\r
-       BIT_EM = 0x02,\r
-       BIT_IM = 0x03,\r
-       BIT_JM = 0x04,\r
-       BIT_xM = 0x07,\r
-\r
-       BIT_DD = 0x00,\r
-       BIT_MD = 0x08,\r
-       // [EIJ]D not sallowed\r
-       BIT_xD = 0x08,\r
-\r
-       BIT_EE = 0x00,\r
-       BIT_ME = 0x10,\r
-       //  [DDJ]E not allowed\r
-       BIT_xE = 0x10,\r
-\r
-       BIT_II = 0x00,\r
-       BIT_MI = 0x20,\r
-       //  [EDJ]I not allowed\r
-       BIT_xI = 0x20,\r
-\r
-       BIT_JJ = 0x00,\r
-       BIT_MJ = 0x40,\r
-       //  [EDI]J not allowed\r
-       BIT_xJ = 0x40,\r
-       };\r
-#endif\r
-\r
-enum EXIT\r
-       {\r
-       EXIT_Success = 0,\r
-       EXIT_NotStarted = 1,\r
-       EXIT_FatalError = 2,\r
-       EXIT_Except = 3,\r
-       };\r
-\r
-enum NODECMP\r
-       {\r
-       NODECMP_Undefined = 0,\r
-       NODECMP_Same = 0,               // equivalent to node in old tree\r
-       NODECMP_Diff = 1,               // equivalent & parent is changed\r
-       NODECMP_Changed = 2             // no equivalent node in old tree\r
-       };\r
-\r
-// Declare enums using macro hacks (see enums.h).\r
-#define s(t)   enum t { t##_Undefined = 0,\r
-#define c(t, x)        t##_##x,\r
-#define e(t)   };\r
-#include "enums.h"\r
-\r
-// Declare conversion function XXXToStr(XXX x)\r
-// for each enum type XXX.\r
-#define        s(t)    const char *t##ToStr(t x);\r
-#define c(t, x)        /* empty */\r
-#define e(t)   /* empty */\r
-#include "enums.h"\r
-\r
-// Declare conversion function StrToXXX(const char *Str)\r
-// for each enum type XXX.\r
-#define        s(t)    t StrTo##t(const char *Str);\r
-#define c(t, x)        /* empty */\r
-#define e(t)   /* empty */\r
-#include "enums.h"\r
-\r
-const char *BoolToStr(bool b);\r
-const char *SecsToStr(unsigned long Secs);\r
-\r
-#endif // types_h\r