Delete unneeded directory

[jabaws.git] / website / archive / binaries / mac / src / muscle / usage.cpp

diff --git a/website/archive/binaries/mac/src/muscle/usage.cpp b/website/archive/binaries/mac/src/muscle/usage.cpp
deleted file mode 100644 (file)
index 39a49f6..0000000
--- a/website/archive/binaries/mac/src/muscle/usage.cpp
+++ /dev/null
@@ -1,44 +0,0 @@
-#include "muscle.h"\r
-#include <stdio.h>\r
-\r
-void Credits()\r
-       {\r
-       static bool Displayed = false;\r
-       if (Displayed)\r
-               return;\r
-\r
-       fprintf(stderr, "\n%s\n\n", MUSCLE_LONG_VERSION);\r
-       fprintf(stderr, "http://www.drive5.com/muscle\n");\r
-       fprintf(stderr, "This software is donated to the public domain.\n");\r
-       fprintf(stderr, "Please cite: Edgar, R.C. Nucleic Acids Res 32(5), 1792-97.\n\n");\r
-       Displayed = true;\r
-       }\r
-\r
-void Usage()\r
-       {\r
-       Credits();\r
-       fprintf(stderr,\r
-"\n"\r
-"Basic usage\n"\r
-"\n"\r
-"    muscle -in <inputfile> -out <outputfile>\n"\r
-"\n"\r
-"Common options (for a complete list please see the User Guide):\n"\r
-"\n"\r
-"    -in <inputfile>    Input file in FASTA format (default stdin)\n"\r
-"    -out <outputfile>  Output alignment in FASTA format (default stdout)\n"\r
-"    -diags             Find diagonals (faster for similar sequences)\n"\r
-"    -maxiters <n>      Maximum number of iterations (integer, default 16)\n"\r
-"    -maxhours <h>      Maximum time to iterate in hours (default no limit)\n"\r
-"    -html              Write output in HTML format (default FASTA)\n"\r
-"    -msf               Write output in GCG MSF format (default FASTA)\n"\r
-"    -clw               Write output in CLUSTALW format (default FASTA)\n"\r
-"    -clwstrict         As -clw, with 'CLUSTAL W (1.81)' header\n"\r
-"    -log[a] <logfile>  Log to file (append if -loga, overwrite if -log)\n"\r
-"    -quiet             Do not write progress messages to stderr\n"\r
-"    -version           Display version information and exit\n"\r
-"\n"\r
-"Without refinement (very fast, avg accuracy similar to T-Coffee): -maxiters 2\n"\r
-"Fastest possible (amino acids): -maxiters 1 -diags -sv -distance1 kbit20_3\n"\r
-"Fastest possible (nucleotides): -maxiters 1 -diags\n");\r
-       }\r