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-<META NAME="date" CONTENT="2010-12-09">\r
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<A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence" target="classFrame">ClustalAlignmentUtil</A>\r
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+<A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence" target="classFrame">ConservationMethod</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/DisemblResultAnnot.html" title="enum in compbio.data.sequence" target="classFrame">DisemblResultAnnot</A>\r
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<A HREF="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence" target="classFrame">FastaSequence</A>\r
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<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa" target="classFrame"><I>JABAService</I></A>\r
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-<A HREF="compbio/data/sequence/JalviewAnnotation.html" title="class in compbio.data.sequence" target="classFrame">JalviewAnnotation</A>\r
-<BR>\r
<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa" target="classFrame"><I>JManagement</I></A>\r
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<A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata" target="classFrame">JobExecutionException</A>\r
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<A HREF="compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client" target="classFrame">MetadataHelper</A>\r
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-<A HREF="compbio/data/sequence/Method.html" title="enum in compbio.data.sequence" target="classFrame">Method</A>\r
-<BR>\r
<A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa" target="classFrame"><I>MsaWS</I></A>\r
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<A HREF="compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence" target="classFrame">MultiAnnotatedSequence</A>\r
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<A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client" target="classFrame">Services</A>\r
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+<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence" target="classFrame">SMERFSConstraints</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence" target="classFrame">UnknownFileFormatException</A>\r
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<A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata" target="classFrame">UnsupportedRuntimeException</A>\r