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Make muscle executable compilation not static to fix problem on Macs
[jabaws.git] / website / dm_javadoc / allclasses-frame.html
diff --git a/website/dm_javadoc/allclasses-frame.html b/website/dm_javadoc/allclasses-frame.html
index c45a41e..094c6c5 100644 (file)
--- a/website/dm_javadoc/allclasses-frame.html
+++ b/website/dm_javadoc/allclasses-frame.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_21) on Wed Nov 24 12:17:19 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_21) on Tue Dec 21 18:32:59 GMT 2010 -->\r
 <TITLE>\r
 All Classes\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-11-24">\r
+<META NAME="date" CONTENT="2010-12-21">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">\r
 \r
@@ -25,14 +25,28 @@ All Classes
 <BR>\r
 <A HREF="compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence" target="classFrame">AlignmentMetadata</A>\r
 <BR>\r
+<A HREF="compbio/data/sequence/AnnotatedSequence.html" title="class in compbio.data.sequence" target="classFrame">AnnotatedSequence</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/Annotation.html" title="interface in compbio.data.msa" target="classFrame"><I>Annotation</I></A>\r
+<BR>\r
 <A HREF="compbio/metadata/Argument.html" title="interface in compbio.metadata" target="classFrame"><I>Argument</I></A>\r
 <BR>\r
 <A HREF="compbio/metadata/ChunkHolder.html" title="class in compbio.metadata" target="classFrame">ChunkHolder</A>\r
 <BR>\r
 <A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence" target="classFrame">ClustalAlignmentUtil</A>\r
 <BR>\r
+<A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence" target="classFrame">ConservationMethod</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/DisemblResultAnnot.html" title="enum in compbio.data.sequence" target="classFrame">DisemblResultAnnot</A>\r
+<BR>\r
 <A HREF="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence" target="classFrame">FastaSequence</A>\r
 <BR>\r
+<A HREF="compbio/ws/client/IOHelper.html" title="class in compbio.ws.client" target="classFrame">IOHelper</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa" target="classFrame"><I>JABAService</I></A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa" target="classFrame"><I>JManagement</I></A>\r
+<BR>\r
 <A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata" target="classFrame">JobExecutionException</A>\r
 <BR>\r
 <A HREF="compbio/metadata/JobStatus.html" title="enum in compbio.metadata" target="classFrame">JobStatus</A>\r
@@ -47,8 +61,14 @@ All Classes
 <BR>\r
 <A HREF="compbio/metadata/LimitsManager.html" title="class in compbio.metadata" target="classFrame">LimitsManager</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa" target="classFrame"><I>Metadata</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client" target="classFrame">MetadataHelper</A>\r
+<BR>\r
 <A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa" target="classFrame"><I>MsaWS</I></A>\r
 <BR>\r
+<A HREF="compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence" target="classFrame">MultiAnnotatedSequence</A>\r
+<BR>\r
 <A HREF="compbio/metadata/Option.html" title="class in compbio.metadata" target="classFrame">Option</A>\r
 <BR>\r
 <A HREF="compbio/metadata/Parameter.html" title="class in compbio.metadata" target="classFrame">Parameter</A>\r
@@ -63,10 +83,14 @@ All Classes
 <BR>\r
 <A HREF="compbio/metadata/RunnerConfig.html" title="class in compbio.metadata" target="classFrame">RunnerConfig</A>\r
 <BR>\r
+<A HREF="compbio/data/sequence/Score.html" title="class in compbio.data.sequence" target="classFrame">Score</A>\r
+<BR>\r
 <A HREF="compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence" target="classFrame">SequenceUtil</A>\r
 <BR>\r
 <A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client" target="classFrame">Services</A>\r
 <BR>\r
+<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence" target="classFrame">SMERFSConstraints</A>\r
+<BR>\r
 <A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence" target="classFrame">UnknownFileFormatException</A>\r
 <BR>\r
 <A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata" target="classFrame">UnsupportedRuntimeException</A>\r