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Fix core WST file
[jabaws.git] / website / dm_javadoc / allclasses-noframe.html
diff --git a/website/dm_javadoc/allclasses-noframe.html b/website/dm_javadoc/allclasses-noframe.html
index d4c0a07..6d881ce 100644 (file)
--- a/website/dm_javadoc/allclasses-noframe.html
+++ b/website/dm_javadoc/allclasses-noframe.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:28 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:08:25 GMT 2011 -->\r
 <TITLE>\r
 All Classes\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">\r
 \r
@@ -21,60 +21,200 @@ All Classes
 \r
 <TABLE BORDER="0" WIDTH="100%" SUMMARY="">\r
 <TR>\r
-<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>\r
+<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/ws/client/AAConClient.html" title="class in compbio.ws.client">AAConClient</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws">Align</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>\r
 <BR>\r
 <A HREF="compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence">AlignmentMetadata</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/AlignResponse.html" title="class in compbio.data.msa.jaxws">AlignResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/Analize.html" title="class in compbio.data.msa.jaxws">Analize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/AnalizeResponse.html" title="class in compbio.data.msa.jaxws">AnalizeResponse</A>\r
+<BR>\r
 <A HREF="compbio/metadata/Argument.html" title="interface in compbio.metadata"><I>Argument</I></A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/CancelJob.html" title="class in compbio.data.msa.jaxws">CancelJob</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/CancelJobResponse.html" title="class in compbio.data.msa.jaxws">CancelJobResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A>\r
+<BR>\r
 <A HREF="compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A>\r
 <BR>\r
 <A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A>\r
 <BR>\r
+<A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAlign.html" title="class in compbio.data.msa.jaxws">CustomAlign</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAlignResponse.html" title="class in compbio.data.msa.jaxws">CustomAlignResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAnalize.html" title="class in compbio.data.msa.jaxws">CustomAnalize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAnalizeResponse.html" title="class in compbio.data.msa.jaxws">CustomAnalizeResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A>\r
+<BR>\r
 <A HREF="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/GetAnnotation.html" title="class in compbio.data.msa.jaxws">GetAnnotation</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetAnnotationResponse.html" title="class in compbio.data.msa.jaxws">GetAnnotationResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetJobStatus.html" title="class in compbio.data.msa.jaxws">GetJobStatus</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetJobStatusResponse.html" title="class in compbio.data.msa.jaxws">GetJobStatusResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTested.html" title="class in compbio.data.msa.jaxws">GetLastTested</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOn.html" title="class in compbio.data.msa.jaxws">GetLastTestedOn</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOnResponse.html" title="class in compbio.data.msa.jaxws">GetLastTestedOnResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedResponse.html" title="class in compbio.data.msa.jaxws">GetLastTestedResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLimit.html" title="class in compbio.data.msa.jaxws">GetLimit</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLimitResponse.html" title="class in compbio.data.msa.jaxws">GetLimitResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLimits.html" title="class in compbio.data.msa.jaxws">GetLimits</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLimitsResponse.html" title="class in compbio.data.msa.jaxws">GetLimitsResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetPresets.html" title="class in compbio.data.msa.jaxws">GetPresets</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetPresetsResponse.html" title="class in compbio.data.msa.jaxws">GetPresetsResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetResult.html" title="class in compbio.data.msa.jaxws">GetResult</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetResultResponse.html" title="class in compbio.data.msa.jaxws">GetResultResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetRunnerOptions.html" title="class in compbio.data.msa.jaxws">GetRunnerOptions</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetRunnerOptionsResponse.html" title="class in compbio.data.msa.jaxws">GetRunnerOptionsResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceCategories.html" title="class in compbio.data.msa.jaxws">GetServiceCategories</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceCategoriesResponse.html" title="class in compbio.data.msa.jaxws">GetServiceCategoriesResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceDescription.html" title="class in compbio.data.msa.jaxws">GetServiceDescription</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceDescriptionResponse.html" title="class in compbio.data.msa.jaxws">GetServiceDescriptionResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetSupportedServices.html" title="class in compbio.data.msa.jaxws">GetSupportedServices</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetSupportedServicesResponse.html" title="class in compbio.data.msa.jaxws">GetSupportedServicesResponse</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/IOHelper.html" title="class in compbio.ws.client">IOHelper</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/IsOperating.html" title="class in compbio.data.msa.jaxws">IsOperating</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/IsOperatingResponse.html" title="class in compbio.data.msa.jaxws">IsOperatingResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa"><I>JABAService</I></A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa"><I>JManagement</I></A>\r
+<BR>\r
 <A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata">JobExecutionException</A>\r
 <BR>\r
 <A HREF="compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>\r
 <BR>\r
 <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A>\r
 <BR>\r
-<A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>\r
+<A HREF="compbio/data/msa/jaxws/JobSubmissionExceptionBean.html" title="class in compbio.data.msa.jaxws">JobSubmissionExceptionBean</A>\r
 <BR>\r
-<A HREF="compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A>\r
+<A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>\r
 <BR>\r
 <A HREF="compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>\r
 <BR>\r
 <A HREF="compbio/metadata/LimitExceededException.html" title="class in compbio.metadata">LimitExceededException</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/LimitExceededExceptionBean.html" title="class in compbio.data.msa.jaxws">LimitExceededExceptionBean</A>\r
+<BR>\r
 <A HREF="compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa"><I>Metadata</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client">MetadataHelper</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><I>MsaWS</I></A>\r
+<BR>\r
 <A HREF="compbio/metadata/Option.html" title="class in compbio.metadata">Option</A>\r
 <BR>\r
 <A HREF="compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A>\r
 <BR>\r
 <A HREF="compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAlign.html" title="class in compbio.data.msa.jaxws">PresetAlign</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAlignResponse.html" title="class in compbio.data.msa.jaxws">PresetAlignResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAnalize.html" title="class in compbio.data.msa.jaxws">PresetAnalize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAnalizeResponse.html" title="class in compbio.data.msa.jaxws">PresetAnalizeResponse</A>\r
+<BR>\r
 <A HREF="compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>\r
 <BR>\r
 <A HREF="compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/PullExecStatistics.html" title="class in compbio.data.msa.jaxws">PullExecStatistics</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/PullExecStatisticsResponse.html" title="class in compbio.data.msa.jaxws">PullExecStatisticsResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa"><I>RegistryWS</I></A>\r
+<BR>\r
 <A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.html" title="class in compbio.data.msa.jaxws">ResultNotAvailableExceptionBean</A>\r
+<BR>\r
 <A HREF="compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</A>\r
 <BR>\r
+<A HREF="compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><I>SequenceAnnotation</I></A>\r
+<BR>\r
 <A HREF="compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>\r
 <BR>\r
+<A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/ServicesUtil.html" title="class in compbio.ws.client">ServicesUtil</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws">TestAllServices</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws">TestAllServicesResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws">TestService</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws">TestServiceResponse</A>\r
+<BR>\r
 <A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence">UnknownFileFormatException</A>\r
 <BR>\r
 <A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.html" title="class in compbio.data.msa.jaxws">UnsupportedRuntimeExceptionBean</A>\r
+<BR>\r
 <A HREF="compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</A>\r
 <BR>\r
 <A HREF="compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>\r
 <BR>\r
 <A HREF="compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">WrongParameterException</A>\r
 <BR>\r
+<A HREF="compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws">WrongParameterExceptionBean</A>\r
+<BR>\r
 <A HREF="compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>\r
 <BR>\r
 </FONT></TD>\r