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-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:28 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_21) on Wed Nov 24 12:17:18 GMT 2010 -->\r
<TITLE>\r
Jws2Client\r
</TITLE>\r
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-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2010-11-24">\r
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- <A HREF="../../../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client"><B>NEXT CLASS</B></A></FONT></TD>\r
+ <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><B>NEXT CLASS</B></A></FONT></TD>\r
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- SUMMARY: <A HREF="#nested_class_summary">NESTED</A> | FIELD | CONSTR | <A HREF="#method_summary">METHOD</A></FONT></TD>\r
+ SUMMARY: NESTED | FIELD | CONSTR | <A HREF="#method_summary">METHOD</A></FONT></TD>\r
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Class Jws2Client</H2>\r
<PRE>\r
-java.lang.Object\r
+<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>\r
<IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.ws.client.Jws2Client</B>\r
</PRE>\r
<HR>\r
<DL>\r
-<DT><PRE>public class <B>Jws2Client</B><DT>extends java.lang.Object</DL>\r
+<DT><PRE>public class <B>Jws2Client</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>\r
</PRE>\r
\r
<P>\r
-A command line client for Jalview Web Services version 2\r
+A command line client for JAva Bioinformatics Analysis Web Services\r
<P>\r
\r
<P>\r
<DL>\r
+<DT><B>Version:</B></DT>\r
+ <DD>1.0</DD>\r
<DT><B>Author:</B></DT>\r
<DD>pvtroshin</DD>\r
</DL>\r
<HR>\r
\r
<P>\r
-<!-- ======== NESTED CLASS SUMMARY ======== -->\r
\r
-<A NAME="nested_class_summary"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Nested Class Summary</B></FONT></TH>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static class</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A></B></CODE>\r
-\r
-<BR>\r
- List of web services currently supported by JWS2</TD>\r
-</TR>\r
-</TABLE>\r
- \r
<!-- ========== METHOD SUMMARY =========== -->\r
\r
<A NAME="method_summary"><!-- --></A>\r
<TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
<TR ALIGN="right" VALIGN="">\r
<TD NOWRAP><FONT SIZE="-1">\r
-<CODE><T> compbio.data.msa.MsaWS<T></CODE></FONT></TD>\r
+<CODE><T> <A HREF="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</A><T></CODE></FONT></TD>\r
</TR>\r
</TABLE>\r
</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#connect(java.lang.String, compbio.ws.client.Jws2Client.Services)">connect</A></B>(java.lang.String host,\r
- <A HREF="../../../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A> service)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#connect(java.lang.String, compbio.ws.client.Services)">connect</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> host,\r
+ <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A> service)</CODE>\r
\r
<BR>\r
Connects to a web service by the host and the service name</TD>\r
</TR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static java.lang.String</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#getHost(java.lang.String[])">getHost</A></B>(java.lang.String[] cmd)</CODE>\r
+<CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#getHost(java.lang.String[])">getHost</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>[] cmd)</CODE>\r
\r
<BR>\r
Extracts host name from the command line</TD>\r
</TR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static java.lang.String</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#getServiceName(java.lang.String[])">getServiceName</A></B>(java.lang.String[] cmd)</CODE>\r
+<CODE>static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#getServiceName(java.lang.String[])">getServiceName</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>[] cmd)</CODE>\r
\r
<BR>\r
Extracts service name from the command line</TD>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
<CODE>static void</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#main(java.lang.String[])">main</A></B>(java.lang.String[] args)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#main(java.lang.String[])">main</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>[] args)</CODE>\r
\r
<BR>\r
Starts command line client, if no parameter are supported print help.</TD>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
<CODE>static boolean</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#validURL(java.lang.String)">validURL</A></B>(java.lang.String urlstr)</CODE>\r
+<TD><CODE><B><A HREF="../../../compbio/ws/client/Jws2Client.html#validURL(java.lang.String)">validURL</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> urlstr)</CODE>\r
\r
<BR>\r
Attempt to construct the URL object from the string</TD>\r
<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>\r
</TR>\r
<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#clone()" title="class or interface in java.lang">clone</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#finalize()" title="class or interface in java.lang">finalize</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>\r
</TR>\r
</TABLE>\r
\r
<A NAME="validURL(java.lang.String)"><!-- --></A><H3>\r
validURL</H3>\r
<PRE>\r
-public static boolean <B>validURL</B>(java.lang.String urlstr)</PRE>\r
+public static boolean <B>validURL</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> urlstr)</PRE>\r
<DL>\r
<DD>Attempt to construct the URL object from the string\r
<P>\r
<A NAME="getServiceName(java.lang.String[])"><!-- --></A><H3>\r
getServiceName</H3>\r
<PRE>\r
-public static java.lang.String <B>getServiceName</B>(java.lang.String[] cmd)</PRE>\r
+public static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getServiceName</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>[] cmd)</PRE>\r
<DL>\r
<DD>Extracts service name from the command line\r
<P>\r
<A NAME="getHost(java.lang.String[])"><!-- --></A><H3>\r
getHost</H3>\r
<PRE>\r
-public static java.lang.String <B>getHost</B>(java.lang.String[] cmd)</PRE>\r
+public static <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getHost</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>[] cmd)</PRE>\r
<DL>\r
<DD>Extracts host name from the command line\r
<P>\r
</DL>\r
<HR>\r
\r
-<A NAME="connect(java.lang.String, compbio.ws.client.Jws2Client.Services)"><!-- --></A><H3>\r
+<A NAME="connect(java.lang.String, compbio.ws.client.Services)"><!-- --></A><H3>\r
connect</H3>\r
<PRE>\r
-public static <T> compbio.data.msa.MsaWS<T> <B>connect</B>(java.lang.String host,\r
- <A HREF="../../../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A> service)\r
- throws javax.xml.ws.WebServiceException</PRE>\r
+public static <T> <A HREF="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa">MsaWS</A><T> <B>connect</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> host,\r
+ <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A> service)\r
+ throws <A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/ws/WebServiceException.html?is-external=true" title="class or interface in javax.xml.ws">WebServiceException</A></PRE>\r
<DL>\r
<DD>Connects to a web service by the host and the service name\r
<P>\r
<DT><B>Type Parameters:</B><DD><CODE>T</CODE> - web service type<DT><B>Parameters:</B><DD><CODE>host</CODE> - <DD><CODE>service</CODE> - \r
<DT><B>Returns:</B><DD>MsaWS<T>\r
<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.ws.WebServiceException</CODE></DL>\r
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/javax/xml/ws/WebServiceException.html?is-external=true" title="class or interface in javax.xml.ws">WebServiceException</A></CODE></DL>\r
</DD>\r
</DL>\r
<HR>\r
<A NAME="main(java.lang.String[])"><!-- --></A><H3>\r
main</H3>\r
<PRE>\r
-public static void <B>main</B>(java.lang.String[] args)</PRE>\r
+public static void <B>main</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>[] args)</PRE>\r
<DL>\r
<DD>Starts command line client, if no parameter are supported print help. Two
parameters are required for successfull call the JWS2 host name and a
<TR>\r
<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
PREV CLASS \r
- <A HREF="../../../compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client"><B>NEXT CLASS</B></A></FONT></TD>\r
+ <A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client"><B>NEXT CLASS</B></A></FONT></TD>\r
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<A HREF="Jws2Client.html" target="_top"><B>NO FRAMES</B></A> \r
</TR>\r
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<TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
- SUMMARY: <A HREF="#nested_class_summary">NESTED</A> | FIELD | CONSTR | <A HREF="#method_summary">METHOD</A></FONT></TD>\r
+ SUMMARY: NESTED | FIELD | CONSTR | <A HREF="#method_summary">METHOD</A></FONT></TD>\r
<TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
DETAIL: FIELD | CONSTR | <A HREF="#method_detail">METHOD</A></FONT></TD>\r
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