<div id="page">\r
<div id="banner">\r
<table> \r
-<tr><td style="width:130px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt.gif" alt="University of Dundee" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws.png" title="JABAWS:MSA" alt="JABAWS:MSA"/></td>\r
-<td class="bg"><img src="images/align.png"/></td>\r
+<tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" alt="University of Dundee" width="158" height="90" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>\r
+<td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
</tr>\r
-</table></div>\r
+</table>\r
+</div>\r
\r
<!-- banner end-->\r
<div id="wrapper">\r
<a href="man_about.html">Manual</a> \r
<a class="selected" href="download.html">Download</a> \r
<a href="contacts.html">Contact Us</a>\r
-<a href="http://www.compbio.dundee.ac.uk">Barton Group</a> \r
+<a href="PublicAnnualStat" title="JABAWS usage statistics">Usage Statistics</a>\r
+<a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
</div>\r
\r
<!-- panel end-->\r
<div id="content">\r
- <h2 id="headtitle" style="text-align:left">JABAWS Server Virtual Machine</h2>\r
- <p><span style="text-align:left">JABAWS virtual machine is a way of running fully functional JABA Web Services on your own computer. To use virtual machine (VM) you have to install a software for running it. We would recommend <a href="http://www.vmware.com/products/player">VMWare Player</a> for Windows and Linux users. There is also an <a href="http://www.virtualbox.org/wiki/Download_Old_Builds_3_2">Oracle VirtualBox</a> (version 3.2.12) for Mac users. Both are free and installation is simple. <a href="http://www.jalview.org/download.html">Jalview</a></span> can <a href="man_servervm.html#jalviewWithJaba">use your local JABAWS VM</a>. </p>\r
+ <h2 id="headtitle" style="text-align:left">JABAWS Server Virtual Appliance </h2>\r
+ <p><span style="text-align:left">JABAWS virtual machine is a way of running fully functional JABA Web Services on your own computer. To use virtual machine (VM) you have to install a software for running it. We would recommend <a href="http://www.vmware.com/products/player">VMWare Player</a> for Windows and Linux users or <a href="http://www.vmware.com/products/fusion/overview.html">VMware Fusion</a> for Mac users. <a href="http://www.jalview.org/download.html">Jalview</a></span> can <a href="man_servervm.html#jalviewWithJaba">use your local JABAWS VA</a>. </p>\r
<ul>\r
- <li> JABAWS Virtual Appliance: <a href="http://www.compbio.dundee.ac.uk/jabaws/archive/jabaws-vm.zip">download</a> (520M)</li>\r
+ <li> JABAWS Virtual Appliance: <a href="archive/jabaws-vm.zip">download</a> (520M)</li>\r
</ul>\r
<p>Please check out our <a href="man_servervm.html#whenvm">manual</a> for the detailed instructions. </p>\r
\r
\r
<h2><a name="jabawswar" id="jabawswar"></a>JABAWS Server Web Application </h2>\r
-<p> The JABAWS Server Web Application aRchive (WAR) version is for you if you want to deploy JABAWS for many users e.g. your laboratory or if you are an expert user and want to have more control on JABAWS. Typically, you will have a cluster or at least a powerful server machine which all users are willing to use. If you only have a single server then, you may use JABAWS Server Virtual Appliance instead. The server is provided as a self-contained <a href="http://en.wikipedia.org/wiki/WAR_(Sun_file_format)">Web Application\r
-aRchive (WAR) </a> containing all necessary binaries. WAR file can be deployed on any\r
- web application server\r
-<!-- Note - mention servlet 2.4 compliance here? -->supporting at least version 2.4 of the Java servlet specification, i.e. <a href="http://tomcat.apache.org/download-60.cgi">Tomcat 6.0</a>. </p>\r
-\r
+<p> The JABAWS Server Web Application aRchive (WAR) version is for you if you want to deploy JABAWS for many users e.g. your laboratory or if you are an expert user and want to have more control on JABAWS. You can also use this version for Mac and Linux computers if you do not want to use virtualization. Finally, you can use this version with a cluster. <br/>\r
+ The server is provided as a self-contained <a href="http://en.wikipedia.org/wiki/WAR_(Sun_file_format)">Web Application\r
+ aRchive (WAR) </a> containing all necessary binaries. WAR file can be deployed on any\r
+ web application server\r
+ <!-- Note - mention servlet 2.4 compliance here? -->\r
+ supporting at the Java servlet specification v. 2.4 or above, i.e. <a href="http://tomcat.apache.org/download-60.cgi">Tomcat 7.0</a>. </p>\r
<ul>\r
-<li>A Complete Server for all platforms: <a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">download</a>\r
-(45M)</li>\r
+<li>A JABAWS WAR for all platforms (comes with precompiled Linux x86 and Windows binaries): <a href=\r
+"archive/jaba.war">download</a>\r
+(55M)</li>\r
+<li>A JABAWS WAR for Mac (comes with precompiled Mac binaries): <a href=\r
+"archive/jabaws.war">download</a> (51M)</li>\r
</ul>\r
\r
\r
-<p>Please bear in mind that if you deploy JABAWS WAR on Windows, only the Muscle and Clustal web services will work! If you want to run the other web services on Windows, then use the JABAWS Server VM package instead. \r
+<p>Please bear in mind that if you deploy JABAWS WAR on Windows, not all web services will be functional. Use the JABAWS Server VA package instead. \r
<!-- content end-->\r
</p>\r
\r
<li>Command line client\r
<ul>\r
<li>binaries: <a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client.jar">download</a> (80 K)</li>\r
+"archive/min-jaba-client-2.0.jar">download</a> (80 K)</li>\r
<li>source: <a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-client-source.jar">download</a> (70 K)</li>\r
+"archive/jaba-client-src-2.0.jar">download</a> (70 K)</li>\r
</ul>\r
</li>\r
</ul>\r
<p>The command line client will display help documentation if it is run with no arguments, the same information is also given in <a href="man_client.html#usingcclient">the command line client's manual page</a>. </p>\r
<h2>Version </h2>\r
-<p>Current JABAWS version is 1.1 release date 7 April 2011. Please consult the <a href="change.log">change log</a> file for the breakdown of the changes. </p>\r
+<p>Current JABAWS version is 2.0 release date 15 August 2011. </p>\r
<div class="source">\r
<div class="header collapsed" onclick=\r
"$(this).toggleClassName('collapsed'); $(this).next('.body').toggleClassName('collapsed');"\r
<li>A complete Eclipse project package: <a href=\r
"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-project.zip">download</a> (82M)</li>\r
<li>JABAWS source only package: <a href=\r
-"archive/jaba-source.jar">download</a> (250K)</li>\r
+"archive/jabaws-src-2.0.jar">download</a> (250K)</li>\r
</ul>\r
\r
<!--body end -->\r
\r
</div>\r
<!-- wrapper end-->\r
-<div id="copyright">Last update: 7 April 2011<br />\r
+<div id="copyright">Last update: 10 August 2011<br />\r
Peter Troshin and Geoff Barton, The Barton Group, University of\r
Dundee, UK</div>\r
\r
git://source.jalview.org / jabaws.git / blobdiff