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-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:51 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:43 GMT 2011 -->\r
<TITLE>\r
All Classes\r
</TITLE>\r
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-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
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<LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">\r
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<TABLE BORDER="0" WIDTH="100%" SUMMARY="">\r
<TR>\r
-<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws" target="classFrame">Align</A>\r
+<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/runner/conservation/AACon.html" title="class in compbio.runner.conservation" target="classFrame">AACon</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/AAConClient.html" title="class in compbio.ws.client" target="classFrame">AAConClient</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/AAConWS.html" title="class in compbio.ws.server" target="classFrame">AAConWS</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws" target="classFrame">Align</A>\r
<BR>\r
<A HREF="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence" target="classFrame">Alignment</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/AlignResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">AlignResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/Analize.html" title="class in compbio.data.msa.jaxws" target="classFrame">Analize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/AnalizeResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">AnalizeResponse</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/AnnualStat.html" title="class in compbio.stat.servlet" target="classFrame">AnnualStat</A>\r
+<BR>\r
<A HREF="compbio/metadata/Argument.html" title="interface in compbio.metadata" target="classFrame"><I>Argument</I></A>\r
<BR>\r
<A HREF="compbio/engine/AsyncExecutor.html" title="interface in compbio.engine" target="classFrame"><I>AsyncExecutor</I></A>\r
<BR>\r
<A HREF="compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl" target="classFrame">BlastAll</A>\r
<BR>\r
+<A HREF="compbio/pipeline/_jpred/BlastBlastComparator.html" title="class in compbio.pipeline._jpred" target="classFrame">BlastBlastComparator</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/BlastHmmerComparator.html" title="class in compbio.pipeline._jpred" target="classFrame">BlastHmmerComparator</A>\r
+<BR>\r
<A HREF="compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl" target="classFrame">BlastParameters</A>\r
<BR>\r
<A HREF="compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred" target="classFrame">BlastParser</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/CancelJobResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">CancelJobResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/Category.html" title="class in compbio.data.msa" target="classFrame">Category</A>\r
+<BR>\r
<A HREF="compbio/metadata/ChunkHolder.html" title="class in compbio.metadata" target="classFrame">ChunkHolder</A>\r
<BR>\r
<A HREF="compbio/engine/Cleaner.html" title="class in compbio.engine" target="classFrame">Cleaner</A>\r
<BR>\r
<A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence" target="classFrame">ClustalAlignmentUtil</A>\r
<BR>\r
+<A HREF="compbio/runner/msa/ClustalO.html" title="class in compbio.runner.msa" target="classFrame">ClustalO</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server" target="classFrame">ClustalOWS</A>\r
+<BR>\r
<A HREF="compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa" target="classFrame">ClustalW</A>\r
<BR>\r
<A HREF="compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server" target="classFrame">ClustalWS</A>\r
<BR>\r
<A HREF="compbio/engine/ClusterJobId.html" title="class in compbio.engine" target="classFrame">ClusterJobId</A>\r
<BR>\r
-<A HREF="compbio/engine/client/ClusterNativeSpecExecutable.html" title="interface in compbio.engine.client" target="classFrame"><I>ClusterNativeSpecExecutable</I></A>\r
-<BR>\r
<A HREF="compbio/engine/cluster/drmaa/ClusterSession.html" title="class in compbio.engine.cluster.drmaa" target="classFrame">ClusterSession</A>\r
<BR>\r
<A HREF="compbio/engine/cluster/drmaa/ClusterUtil.html" title="class in compbio.engine.cluster.drmaa" target="classFrame">ClusterUtil</A>\r
<BR>\r
<A HREF="compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client" target="classFrame"><I>ConfiguredExecutable</I></A>\r
<BR>\r
+<A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence" target="classFrame">ConservationMethod</A>\r
+<BR>\r
<A HREF="compbio/data/msa/jaxws/CustomAlign.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAlign</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/CustomAlignResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAlignResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAnalize.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAnalize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAnalizeResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">CustomAnalizeResponse</A>\r
+<BR>\r
<A HREF="compbio/engine/conf/DirectoryManager.html" title="class in compbio.engine.conf" target="classFrame">DirectoryManager</A>\r
<BR>\r
-<A HREF="compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl" target="classFrame">Disembl</A>\r
+<A HREF="compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder" target="classFrame">Disembl</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server" target="classFrame">DisemblWS</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence" target="classFrame">DisorderMethod</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/DisplayStat.html" title="class in compbio.stat.servlet" target="classFrame">DisplayStat</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/DownloadRedirector.html" title="class in compbio.stat.servlet" target="classFrame">DownloadRedirector</A>\r
<BR>\r
<A HREF="compbio/runner/_impl/Environment.html" title="class in compbio.runner._impl" target="classFrame">Environment</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/engine/local/ExecutableWrapper.html" title="class in compbio.engine.local" target="classFrame">ExecutableWrapper</A>\r
<BR>\r
+<A HREF="compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector" target="classFrame">ExecutionStatCollector</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence" target="classFrame">FastaReader</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence" target="classFrame">FastaSequence</A>\r
<BR>\r
<A HREF="compbio/engine/FilePuller.html" title="class in compbio.engine" target="classFrame">FilePuller</A>\r
<BR>\r
+<A HREF="compbio/ws/server/GAUtils.html" title="class in compbio.ws.server" target="classFrame">GAUtils</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server" target="classFrame">GenericMetadataService</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetAnnotation.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetAnnotation</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetAnnotationResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetAnnotationResponse</A>\r
+<BR>\r
<A HREF="compbio/data/msa/jaxws/GetJobStatus.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetJobStatus</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetJobStatusResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetJobStatusResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTested.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTested</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOn.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTestedOn</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOnResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTestedOnResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLastTestedResponse</A>\r
+<BR>\r
<A HREF="compbio/data/msa/jaxws/GetLimit.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLimit</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetLimitResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetLimitResponse</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetPresetsResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetPresetsResponse</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/GetProgress.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetProgress</A>\r
-<BR>\r
-<A HREF="compbio/data/msa/jaxws/GetProgressResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetProgressResponse</A>\r
-<BR>\r
<A HREF="compbio/data/msa/jaxws/GetResult.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetResult</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetResultResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetResultResponse</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetRunnerOptionsResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetRunnerOptionsResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceCategories.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceCategories</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceCategoriesResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceCategoriesResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceDescription.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceDescription</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceDescriptionResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetServiceDescriptionResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetSupportedServices.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetSupportedServices</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetSupportedServicesResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">GetSupportedServicesResponse</A>\r
+<BR>\r
+<A HREF="compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder" target="classFrame">GlobPlot</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server" target="classFrame">GlobPlotWS</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred" target="classFrame">Hit</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred" target="classFrame">Hit.EvalueComporator</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred" target="classFrame">Hit.NumberComporator</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/HttpCodeResponseServiceStatus.html" title="class in compbio.stat.servlet" target="classFrame">HttpCodeResponseServiceStatus</A>\r
+<BR>\r
+<A HREF="compbio/stat/collector/InputFilter.html" title="class in compbio.stat.collector" target="classFrame">InputFilter</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/IOHelper.html" title="class in compbio.ws.client" target="classFrame">IOHelper</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/IsOperating.html" title="class in compbio.data.msa.jaxws" target="classFrame">IsOperating</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/IsOperatingResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">IsOperatingResponse</A>\r
+<BR>\r
+<A HREF="compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder" target="classFrame">IUPred</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server" target="classFrame">IUPredWS</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa" target="classFrame"><I>JABAService</I></A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/JackHmmerHitParser.html" title="class in compbio.pipeline._jpred" target="classFrame">JackHmmerHitParser</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa" target="classFrame"><I>JManagement</I></A>\r
+<BR>\r
<A HREF="compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure" target="classFrame">JnetAnnotation</A>\r
<BR>\r
<A HREF="compbio/engine/Job.html" title="class in compbio.engine" target="classFrame">Job</A>\r
<BR>\r
<A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata" target="classFrame">JobExecutionException</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/JobExecutionExceptionBean.html" title="class in compbio.data.msa.jaxws" target="classFrame">JobExecutionExceptionBean</A>\r
+<A HREF="compbio/stat/servlet/Joblist.html" title="class in compbio.stat.servlet" target="classFrame">Joblist</A>\r
<BR>\r
<A HREF="compbio/engine/cluster/drmaa/JobRunner.html" title="class in compbio.engine.cluster.drmaa" target="classFrame">JobRunner</A>\r
<BR>\r
+<A HREF="compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector" target="classFrame">JobStat</A>\r
+<BR>\r
<A HREF="compbio/metadata/JobStatus.html" title="enum in compbio.metadata" target="classFrame">JobStatus</A>\r
<BR>\r
<A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata" target="classFrame">JobSubmissionException</A>\r
<BR>\r
<A HREF="compbio/data/_structure/JpredResult.html" title="class in compbio.data._structure" target="classFrame">JpredResult</A>\r
<BR>\r
-<A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client" target="classFrame">Jws2Client</A>\r
+<A HREF="compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder" target="classFrame">Jronn</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/JronnWS.html" title="class in compbio.ws.server" target="classFrame">JronnWS</A>\r
<BR>\r
-<A HREF="compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client" target="classFrame">Jws2Client.Services</A>\r
+<A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client" target="classFrame">Jws2Client</A>\r
<BR>\r
<A HREF="compbio/metadata/Limit.html" title="class in compbio.metadata" target="classFrame">Limit</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/runner/_impl/Mcl.html" title="class in compbio.runner._impl" target="classFrame">Mcl</A>\r
<BR>\r
+<A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa" target="classFrame"><I>Metadata</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client" target="classFrame">MetadataHelper</A>\r
+<BR>\r
<A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa" target="classFrame"><I>MsaWS</I></A>\r
<BR>\r
<A HREF="compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa" target="classFrame">Muscle</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/PresetAlignResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">PresetAlignResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAnalize.html" title="class in compbio.data.msa.jaxws" target="classFrame">PresetAnalize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAnalizeResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">PresetAnalizeResponse</A>\r
+<BR>\r
<A HREF="compbio/metadata/PresetManager.html" title="class in compbio.metadata" target="classFrame">PresetManager</A>\r
<BR>\r
<A HREF="compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa" target="classFrame">Probcons</A>\r
<BR>\r
<A HREF="compbio/runner/_impl/PSIBlast.html" title="class in compbio.runner._impl" target="classFrame">PSIBlast</A>\r
<BR>\r
-<A HREF="compbio/runner/psiblast/PsiBlast.html" title="class in compbio.runner.psiblast" target="classFrame">PsiBlast</A>\r
-<BR>\r
<A HREF="compbio/engine/PulledFileCache.html" title="class in compbio.engine" target="classFrame">PulledFileCache</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/PullExecStatistics.html" title="class in compbio.data.msa.jaxws" target="classFrame">PullExecStatistics</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/PullExecStatisticsResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">PullExecStatisticsResponse</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/PullFile.html" title="class in compbio.data.msa.jaxws" target="classFrame">PullFile</A>\r
+<A HREF="compbio/data/sequence/Range.html" title="class in compbio.data.sequence" target="classFrame">Range</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/PullFileResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">PullFileResponse</A>\r
+<A HREF="compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa" target="classFrame"><I>RegistryWS</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server" target="classFrame">RegistryWS</A>\r
<BR>\r
<A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata" target="classFrame">ResultNotAvailableException</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/runner/_impl/Runners.html" title="class in compbio.runner._impl" target="classFrame">Runners</A>\r
<BR>\r
+<A HREF="compbio/data/sequence/Score.html" title="class in compbio.data.sequence" target="classFrame">Score</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence" target="classFrame">ScoreManager</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence" target="classFrame">ScoreManager.ScoreHolder</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa" target="classFrame"><I>SequenceAnnotation</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/server/SequenceAnnotationService.html" title="class in compbio.ws.server" target="classFrame">SequenceAnnotationService</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence" target="classFrame">SequenceUtil</A>\r
<BR>\r
+<A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client" target="classFrame">Services</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/ServiceStatus.html" title="class in compbio.stat.servlet" target="classFrame">ServiceStatus</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/ServicesUtil.html" title="class in compbio.ws.client" target="classFrame">ServicesUtil</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/ServiceTestResult.html" title="class in compbio.stat.servlet" target="classFrame">ServiceTestResult</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/SetExecutableFlag.html" title="class in compbio.ws.server" target="classFrame">SetExecutableFlag</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/ShutdownEngines.html" title="class in compbio.ws.server" target="classFrame">ShutdownEngines</A>\r
+<BR>\r
<A HREF="compbio/ws/server/SimpleWSPublisher.html" title="class in compbio.ws.server" target="classFrame">SimpleWSPublisher</A>\r
<BR>\r
<A HREF="compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client" target="classFrame">SkeletalExecutable</A>\r
<BR>\r
+<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence" target="classFrame">SMERFSConstraints</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util" target="classFrame">StatCollection</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util" target="classFrame">StatCollection.Stattype</A>\r
+<BR>\r
+<A HREF="compbio/stat/collector/StatDB.html" title="class in compbio.stat.collector" target="classFrame">StatDB</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/StatisticCollector.html" title="class in compbio.stat.servlet" target="classFrame">StatisticCollector</A>\r
+<BR>\r
<A HREF="compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa" target="classFrame">StatisticManager</A>\r
<BR>\r
+<A HREF="compbio/stat/collector/StatProcessor.html" title="class in compbio.stat.collector" target="classFrame">StatProcessor</A>\r
+<BR>\r
<A HREF="compbio/engine/local/StreamGobbler.html" title="class in compbio.engine.local" target="classFrame">StreamGobbler</A>\r
<BR>\r
<A HREF="compbio/engine/SubmissionManager.html" title="class in compbio.engine" target="classFrame">SubmissionManager</A>\r
<BR>\r
<A HREF="compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server" target="classFrame">TcoffeeWS</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestAllServices</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestAllServicesResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestService</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws" target="classFrame">TestServiceResponse</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/util/Totals.html" title="class in compbio.stat.servlet.util" target="classFrame">Totals</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence" target="classFrame">UnknownFileFormatException</A>\r
<BR>\r
<A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata" target="classFrame">UnsupportedRuntimeException</A>\r
<BR>\r
<A HREF="compbio/ws/server/WSUtil.html" title="class in compbio.ws.server" target="classFrame">WSUtil</A>\r
<BR>\r
-<A HREF="compbio/engine/cluster/drmaa/_DrmaaExample.html" title="class in compbio.engine.cluster.drmaa" target="classFrame">_DrmaaExample</A>\r
-<BR>\r
-<A HREF="compbio/engine/cluster/drmaa/_JobStatus.html" title="class in compbio.engine.cluster.drmaa" target="classFrame">_JobStatus</A>\r
-<BR>\r
<A HREF="compbio/runner/_jpred/_Jpred.html" title="class in compbio.runner._jpred" target="classFrame">_Jpred</A>\r
<BR>\r
<A HREF="compbio/engine/conf/_Key.html" title="class in compbio.engine.conf" target="classFrame">_Key</A>\r
<BR>\r
+<A HREF="compbio/ws/server/_MsaService.html" title="class in compbio.ws.server" target="classFrame">_MsaService</A>\r
+<BR>\r
<A HREF="compbio/runner/_NativeSpecHelper.html" title="class in compbio.runner" target="classFrame">_NativeSpecHelper</A>\r
<BR>\r
<A HREF="compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee" target="classFrame">_Queue</A>\r
<BR>\r
-<A HREF="compbio/engine/cluster/dundee/_QueueConstraints.html" title="class in compbio.engine.cluster.dundee" target="classFrame">_QueueConstraints</A>\r
-<BR>\r
<A HREF="compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner" target="classFrame">_SkeletalCommandBuilder</A>\r
<BR>\r
-<A HREF="compbio/engine/local/_TrackingExecutor.html" title="class in compbio.engine.local" target="classFrame">_TrackingExecutor</A>\r
+<A HREF="compbio/ws/server/_WSLogger.html" title="class in compbio.ws.server" target="classFrame">_WSLogger</A>\r
<BR>\r
</FONT></TD>\r
</TR>\r
git://source.jalview.org / jabaws.git / blobdiff