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<HTML>\r
<HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:51 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:43 GMT 2011 -->\r
<TITLE>\r
All Classes\r
</TITLE>\r
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-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
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<LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">\r
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<TABLE BORDER="0" WIDTH="100%" SUMMARY="">\r
<TR>\r
-<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws">Align</A>\r
+<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/runner/conservation/AACon.html" title="class in compbio.runner.conservation">AACon</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/AAConClient.html" title="class in compbio.ws.client">AAConClient</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/AAConWS.html" title="class in compbio.ws.server">AAConWS</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws">Align</A>\r
<BR>\r
<A HREF="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/AlignResponse.html" title="class in compbio.data.msa.jaxws">AlignResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/Analize.html" title="class in compbio.data.msa.jaxws">Analize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/AnalizeResponse.html" title="class in compbio.data.msa.jaxws">AnalizeResponse</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/AnnualStat.html" title="class in compbio.stat.servlet">AnnualStat</A>\r
+<BR>\r
<A HREF="compbio/metadata/Argument.html" title="interface in compbio.metadata"><I>Argument</I></A>\r
<BR>\r
<A HREF="compbio/engine/AsyncExecutor.html" title="interface in compbio.engine"><I>AsyncExecutor</I></A>\r
<BR>\r
<A HREF="compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl">BlastAll</A>\r
<BR>\r
+<A HREF="compbio/pipeline/_jpred/BlastBlastComparator.html" title="class in compbio.pipeline._jpred">BlastBlastComparator</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/BlastHmmerComparator.html" title="class in compbio.pipeline._jpred">BlastHmmerComparator</A>\r
+<BR>\r
<A HREF="compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl">BlastParameters</A>\r
<BR>\r
<A HREF="compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred">BlastParser</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/CancelJobResponse.html" title="class in compbio.data.msa.jaxws">CancelJobResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A>\r
+<BR>\r
<A HREF="compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A>\r
<BR>\r
<A HREF="compbio/engine/Cleaner.html" title="class in compbio.engine">Cleaner</A>\r
<BR>\r
<A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A>\r
<BR>\r
+<A HREF="compbio/runner/msa/ClustalO.html" title="class in compbio.runner.msa">ClustalO</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/ClustalOWS.html" title="class in compbio.ws.server">ClustalOWS</A>\r
+<BR>\r
<A HREF="compbio/runner/msa/ClustalW.html" title="class in compbio.runner.msa">ClustalW</A>\r
<BR>\r
<A HREF="compbio/ws/server/ClustalWS.html" title="class in compbio.ws.server">ClustalWS</A>\r
<BR>\r
<A HREF="compbio/engine/ClusterJobId.html" title="class in compbio.engine">ClusterJobId</A>\r
<BR>\r
-<A HREF="compbio/engine/client/ClusterNativeSpecExecutable.html" title="interface in compbio.engine.client"><I>ClusterNativeSpecExecutable</I></A>\r
-<BR>\r
<A HREF="compbio/engine/cluster/drmaa/ClusterSession.html" title="class in compbio.engine.cluster.drmaa">ClusterSession</A>\r
<BR>\r
<A HREF="compbio/engine/cluster/drmaa/ClusterUtil.html" title="class in compbio.engine.cluster.drmaa">ClusterUtil</A>\r
<BR>\r
<A HREF="compbio/engine/client/ConfiguredExecutable.html" title="interface in compbio.engine.client"><I>ConfiguredExecutable</I></A>\r
<BR>\r
+<A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>\r
+<BR>\r
<A HREF="compbio/data/msa/jaxws/CustomAlign.html" title="class in compbio.data.msa.jaxws">CustomAlign</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/CustomAlignResponse.html" title="class in compbio.data.msa.jaxws">CustomAlignResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAnalize.html" title="class in compbio.data.msa.jaxws">CustomAnalize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/CustomAnalizeResponse.html" title="class in compbio.data.msa.jaxws">CustomAnalizeResponse</A>\r
+<BR>\r
<A HREF="compbio/engine/conf/DirectoryManager.html" title="class in compbio.engine.conf">DirectoryManager</A>\r
<BR>\r
-<A HREF="compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl">Disembl</A>\r
+<A HREF="compbio/runner/disorder/Disembl.html" title="class in compbio.runner.disorder">Disembl</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/DisemblWS.html" title="class in compbio.ws.server">DisemblWS</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/DisplayStat.html" title="class in compbio.stat.servlet">DisplayStat</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/DownloadRedirector.html" title="class in compbio.stat.servlet">DownloadRedirector</A>\r
<BR>\r
<A HREF="compbio/runner/_impl/Environment.html" title="class in compbio.runner._impl">Environment</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/engine/local/ExecutableWrapper.html" title="class in compbio.engine.local">ExecutableWrapper</A>\r
<BR>\r
+<A HREF="compbio/stat/collector/ExecutionStatCollector.html" title="class in compbio.stat.collector">ExecutionStatCollector</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>\r
<BR>\r
<A HREF="compbio/engine/FilePuller.html" title="class in compbio.engine">FilePuller</A>\r
<BR>\r
+<A HREF="compbio/ws/server/GAUtils.html" title="class in compbio.ws.server">GAUtils</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/GenericMetadataService.html" title="class in compbio.ws.server">GenericMetadataService</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetAnnotation.html" title="class in compbio.data.msa.jaxws">GetAnnotation</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetAnnotationResponse.html" title="class in compbio.data.msa.jaxws">GetAnnotationResponse</A>\r
+<BR>\r
<A HREF="compbio/data/msa/jaxws/GetJobStatus.html" title="class in compbio.data.msa.jaxws">GetJobStatus</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetJobStatusResponse.html" title="class in compbio.data.msa.jaxws">GetJobStatusResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTested.html" title="class in compbio.data.msa.jaxws">GetLastTested</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOn.html" title="class in compbio.data.msa.jaxws">GetLastTestedOn</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOnResponse.html" title="class in compbio.data.msa.jaxws">GetLastTestedOnResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetLastTestedResponse.html" title="class in compbio.data.msa.jaxws">GetLastTestedResponse</A>\r
+<BR>\r
<A HREF="compbio/data/msa/jaxws/GetLimit.html" title="class in compbio.data.msa.jaxws">GetLimit</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetLimitResponse.html" title="class in compbio.data.msa.jaxws">GetLimitResponse</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetPresetsResponse.html" title="class in compbio.data.msa.jaxws">GetPresetsResponse</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/GetProgress.html" title="class in compbio.data.msa.jaxws">GetProgress</A>\r
-<BR>\r
-<A HREF="compbio/data/msa/jaxws/GetProgressResponse.html" title="class in compbio.data.msa.jaxws">GetProgressResponse</A>\r
-<BR>\r
<A HREF="compbio/data/msa/jaxws/GetResult.html" title="class in compbio.data.msa.jaxws">GetResult</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetResultResponse.html" title="class in compbio.data.msa.jaxws">GetResultResponse</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/GetRunnerOptionsResponse.html" title="class in compbio.data.msa.jaxws">GetRunnerOptionsResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceCategories.html" title="class in compbio.data.msa.jaxws">GetServiceCategories</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceCategoriesResponse.html" title="class in compbio.data.msa.jaxws">GetServiceCategoriesResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceDescription.html" title="class in compbio.data.msa.jaxws">GetServiceDescription</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetServiceDescriptionResponse.html" title="class in compbio.data.msa.jaxws">GetServiceDescriptionResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetSupportedServices.html" title="class in compbio.data.msa.jaxws">GetSupportedServices</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/GetSupportedServicesResponse.html" title="class in compbio.data.msa.jaxws">GetSupportedServicesResponse</A>\r
+<BR>\r
+<A HREF="compbio/runner/disorder/GlobPlot.html" title="class in compbio.runner.disorder">GlobPlot</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/GlobPlotWS.html" title="class in compbio.ws.server">GlobPlotWS</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/Hit.html" title="class in compbio.pipeline._jpred">Hit</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/Hit.EvalueComporator.html" title="class in compbio.pipeline._jpred">Hit.EvalueComporator</A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/Hit.NumberComporator.html" title="class in compbio.pipeline._jpred">Hit.NumberComporator</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/HttpCodeResponseServiceStatus.html" title="class in compbio.stat.servlet">HttpCodeResponseServiceStatus</A>\r
+<BR>\r
+<A HREF="compbio/stat/collector/InputFilter.html" title="class in compbio.stat.collector">InputFilter</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/IOHelper.html" title="class in compbio.ws.client">IOHelper</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/IsOperating.html" title="class in compbio.data.msa.jaxws">IsOperating</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/IsOperatingResponse.html" title="class in compbio.data.msa.jaxws">IsOperatingResponse</A>\r
+<BR>\r
+<A HREF="compbio/runner/disorder/IUPred.html" title="class in compbio.runner.disorder">IUPred</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/IUPredWS.html" title="class in compbio.ws.server">IUPredWS</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa"><I>JABAService</I></A>\r
+<BR>\r
+<A HREF="compbio/pipeline/_jpred/JackHmmerHitParser.html" title="class in compbio.pipeline._jpred">JackHmmerHitParser</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa"><I>JManagement</I></A>\r
+<BR>\r
<A HREF="compbio/data/_structure/JnetAnnotation.html" title="enum in compbio.data._structure">JnetAnnotation</A>\r
<BR>\r
<A HREF="compbio/engine/Job.html" title="class in compbio.engine">Job</A>\r
<BR>\r
<A HREF="compbio/metadata/JobExecutionException.html" title="class in compbio.metadata">JobExecutionException</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/JobExecutionExceptionBean.html" title="class in compbio.data.msa.jaxws">JobExecutionExceptionBean</A>\r
+<A HREF="compbio/stat/servlet/Joblist.html" title="class in compbio.stat.servlet">Joblist</A>\r
<BR>\r
<A HREF="compbio/engine/cluster/drmaa/JobRunner.html" title="class in compbio.engine.cluster.drmaa">JobRunner</A>\r
<BR>\r
+<A HREF="compbio/stat/collector/JobStat.html" title="class in compbio.stat.collector">JobStat</A>\r
+<BR>\r
<A HREF="compbio/metadata/JobStatus.html" title="enum in compbio.metadata">JobStatus</A>\r
<BR>\r
<A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A>\r
<BR>\r
<A HREF="compbio/data/_structure/JpredResult.html" title="class in compbio.data._structure">JpredResult</A>\r
<BR>\r
-<A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>\r
+<A HREF="compbio/runner/disorder/Jronn.html" title="class in compbio.runner.disorder">Jronn</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/JronnWS.html" title="class in compbio.ws.server">JronnWS</A>\r
<BR>\r
-<A HREF="compbio/ws/client/Jws2Client.Services.html" title="enum in compbio.ws.client">Jws2Client.Services</A>\r
+<A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>\r
<BR>\r
<A HREF="compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/runner/_impl/Mcl.html" title="class in compbio.runner._impl">Mcl</A>\r
<BR>\r
+<A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa"><I>Metadata</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client">MetadataHelper</A>\r
+<BR>\r
<A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><I>MsaWS</I></A>\r
<BR>\r
<A HREF="compbio/runner/msa/Muscle.html" title="class in compbio.runner.msa">Muscle</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/PresetAlignResponse.html" title="class in compbio.data.msa.jaxws">PresetAlignResponse</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAnalize.html" title="class in compbio.data.msa.jaxws">PresetAnalize</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/PresetAnalizeResponse.html" title="class in compbio.data.msa.jaxws">PresetAnalizeResponse</A>\r
+<BR>\r
<A HREF="compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>\r
<BR>\r
<A HREF="compbio/runner/msa/Probcons.html" title="class in compbio.runner.msa">Probcons</A>\r
<BR>\r
<A HREF="compbio/runner/_impl/PSIBlast.html" title="class in compbio.runner._impl">PSIBlast</A>\r
<BR>\r
-<A HREF="compbio/runner/psiblast/PsiBlast.html" title="class in compbio.runner.psiblast">PsiBlast</A>\r
-<BR>\r
<A HREF="compbio/engine/PulledFileCache.html" title="class in compbio.engine">PulledFileCache</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/PullExecStatistics.html" title="class in compbio.data.msa.jaxws">PullExecStatistics</A>\r
<BR>\r
<A HREF="compbio/data/msa/jaxws/PullExecStatisticsResponse.html" title="class in compbio.data.msa.jaxws">PullExecStatisticsResponse</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/PullFile.html" title="class in compbio.data.msa.jaxws">PullFile</A>\r
+<A HREF="compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</A>\r
<BR>\r
-<A HREF="compbio/data/msa/jaxws/PullFileResponse.html" title="class in compbio.data.msa.jaxws">PullFileResponse</A>\r
+<A HREF="compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa"><I>RegistryWS</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/server/RegistryWS.html" title="class in compbio.ws.server">RegistryWS</A>\r
<BR>\r
<A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A>\r
<BR>\r
<BR>\r
<A HREF="compbio/runner/_impl/Runners.html" title="class in compbio.runner._impl">Runners</A>\r
<BR>\r
+<A HREF="compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A>\r
+<BR>\r
+<A HREF="compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><I>SequenceAnnotation</I></A>\r
+<BR>\r
+<A HREF="compbio/ws/server/SequenceAnnotationService.html" title="class in compbio.ws.server">SequenceAnnotationService</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>\r
<BR>\r
+<A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/ServiceStatus.html" title="class in compbio.stat.servlet">ServiceStatus</A>\r
+<BR>\r
+<A HREF="compbio/ws/client/ServicesUtil.html" title="class in compbio.ws.client">ServicesUtil</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/ServiceTestResult.html" title="class in compbio.stat.servlet">ServiceTestResult</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/SetExecutableFlag.html" title="class in compbio.ws.server">SetExecutableFlag</A>\r
+<BR>\r
+<A HREF="compbio/ws/server/ShutdownEngines.html" title="class in compbio.ws.server">ShutdownEngines</A>\r
+<BR>\r
<A HREF="compbio/ws/server/SimpleWSPublisher.html" title="class in compbio.ws.server">SimpleWSPublisher</A>\r
<BR>\r
<A HREF="compbio/engine/client/SkeletalExecutable.html" title="class in compbio.engine.client">SkeletalExecutable</A>\r
<BR>\r
+<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/util/StatCollection.html" title="class in compbio.stat.servlet.util">StatCollection</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/util/StatCollection.Stattype.html" title="enum in compbio.stat.servlet.util">StatCollection.Stattype</A>\r
+<BR>\r
+<A HREF="compbio/stat/collector/StatDB.html" title="class in compbio.stat.collector">StatDB</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/StatisticCollector.html" title="class in compbio.stat.servlet">StatisticCollector</A>\r
+<BR>\r
<A HREF="compbio/engine/cluster/drmaa/StatisticManager.html" title="class in compbio.engine.cluster.drmaa">StatisticManager</A>\r
<BR>\r
+<A HREF="compbio/stat/collector/StatProcessor.html" title="class in compbio.stat.collector">StatProcessor</A>\r
+<BR>\r
<A HREF="compbio/engine/local/StreamGobbler.html" title="class in compbio.engine.local">StreamGobbler</A>\r
<BR>\r
<A HREF="compbio/engine/SubmissionManager.html" title="class in compbio.engine">SubmissionManager</A>\r
<BR>\r
<A HREF="compbio/ws/server/TcoffeeWS.html" title="class in compbio.ws.server">TcoffeeWS</A>\r
<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws">TestAllServices</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws">TestAllServicesResponse</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws">TestService</A>\r
+<BR>\r
+<A HREF="compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws">TestServiceResponse</A>\r
+<BR>\r
+<A HREF="compbio/stat/servlet/util/Totals.html" title="class in compbio.stat.servlet.util">Totals</A>\r
+<BR>\r
<A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence">UnknownFileFormatException</A>\r
<BR>\r
<A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</A>\r
<BR>\r
<A HREF="compbio/ws/server/WSUtil.html" title="class in compbio.ws.server">WSUtil</A>\r
<BR>\r
-<A HREF="compbio/engine/cluster/drmaa/_DrmaaExample.html" title="class in compbio.engine.cluster.drmaa">_DrmaaExample</A>\r
-<BR>\r
-<A HREF="compbio/engine/cluster/drmaa/_JobStatus.html" title="class in compbio.engine.cluster.drmaa">_JobStatus</A>\r
-<BR>\r
<A HREF="compbio/runner/_jpred/_Jpred.html" title="class in compbio.runner._jpred">_Jpred</A>\r
<BR>\r
<A HREF="compbio/engine/conf/_Key.html" title="class in compbio.engine.conf">_Key</A>\r
<BR>\r
+<A HREF="compbio/ws/server/_MsaService.html" title="class in compbio.ws.server">_MsaService</A>\r
+<BR>\r
<A HREF="compbio/runner/_NativeSpecHelper.html" title="class in compbio.runner">_NativeSpecHelper</A>\r
<BR>\r
<A HREF="compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A>\r
<BR>\r
-<A HREF="compbio/engine/cluster/dundee/_QueueConstraints.html" title="class in compbio.engine.cluster.dundee">_QueueConstraints</A>\r
-<BR>\r
<A HREF="compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner">_SkeletalCommandBuilder</A>\r
<BR>\r
-<A HREF="compbio/engine/local/_TrackingExecutor.html" title="class in compbio.engine.local">_TrackingExecutor</A>\r
+<A HREF="compbio/ws/server/_WSLogger.html" title="class in compbio.ws.server">_WSLogger</A>\r
<BR>\r
</FONT></TD>\r
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git://source.jalview.org / jabaws.git / blobdiff