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+SequenceUtil\r
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+<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
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+ SUMMARY: NESTED | <A HREF="#field_summary">FIELD</A> | CONSTR | <A HREF="#method_summary">METHOD</A></FONT></TD>\r
+<TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
+DETAIL: <A HREF="#field_detail">FIELD</A> | CONSTR | <A HREF="#method_detail">METHOD</A></FONT></TD>\r
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+<!-- ========= END OF TOP NAVBAR ========= -->\r
+\r
+<HR>\r
+<!-- ======== START OF CLASS DATA ======== -->\r
+<H2>\r
+<FONT SIZE="-1">\r
+compbio.data.sequence</FONT>\r
+<BR>\r
+Class SequenceUtil</H2>\r
+<PRE>\r
+java.lang.Object\r
+ <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.SequenceUtil</B>\r
+</PRE>\r
+<HR>\r
+<DL>\r
+<DT><PRE>public final class <B>SequenceUtil</B><DT>extends java.lang.Object</DL>\r
+</PRE>\r
+\r
+<P>\r
+Utility class for operations on sequences\r
+<P>\r
+\r
+<P>\r
+<DL>\r
+<DT><B>Author:</B></DT>\r
+ <DD>pvtroshin
+
+ Date September 2009</DD>\r
+</DL>\r
+<HR>\r
+\r
+<P>\r
+<!-- =========== FIELD SUMMARY =========== -->\r
+\r
+<A NAME="field_summary"><!-- --></A>\r
+<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
+<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
+<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
+<B>Field Summary</B></FONT></TH>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#AA">AA</A></B></CODE>\r
+\r
+<BR>\r
+ Valid Amino acids</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#AMBIGUOUS_AA">AMBIGUOUS_AA</A></B></CODE>\r
+\r
+<BR>\r
+ Same as AA pattern but with two additional letters - XU</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#AMBIGUOUS_NUCLEOTIDE">AMBIGUOUS_NUCLEOTIDE</A></B></CODE>\r
+\r
+<BR>\r
+ Ambiguous nucleotide</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#DIGIT">DIGIT</A></B></CODE>\r
+\r
+<BR>\r
+ A digit</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#NON_AA">NON_AA</A></B></CODE>\r
+\r
+<BR>\r
+ inversion of AA pattern</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#NON_NUCLEOTIDE">NON_NUCLEOTIDE</A></B></CODE>\r
+\r
+<BR>\r
+ Non nucleotide</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#NONWORD">NONWORD</A></B></CODE>\r
+\r
+<BR>\r
+ Non word</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#NUCLEOTIDE">NUCLEOTIDE</A></B></CODE>\r
+\r
+<BR>\r
+ Nucleotides a, t, g, c, u</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.regex.Pattern</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#WHITE_SPACE">WHITE_SPACE</A></B></CODE>\r
+\r
+<BR>\r
+ A whitespace character: [\t\n\x0B\f\r]</TD>\r
+</TR>\r
+</TABLE>\r
+ \r
+<!-- ========== METHOD SUMMARY =========== -->\r
+\r
+<A NAME="method_summary"><!-- --></A>\r
+<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
+<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
+<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
+<B>Method Summary</B></FONT></TH>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.lang.String</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#cleanSequence(java.lang.String)">cleanSequence</A></B>(java.lang.String sequence)</CODE>\r
+\r
+<BR>\r
+ Removes all whitespace chars in the sequence string</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.lang.String</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#deepCleanSequence(java.lang.String)">deepCleanSequence</A></B>(java.lang.String sequence)</CODE>\r
+\r
+<BR>\r
+ Removes all special characters and digits as well as whitespace chars
+ from the sequence</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static boolean</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#isAmbiguosProtein(java.lang.String)">isAmbiguosProtein</A></B>(java.lang.String sequence)</CODE>\r
+\r
+<BR>\r
+ Check whether the sequence confirms to amboguous protein sequence</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static boolean</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#isNonAmbNucleotideSequence(java.lang.String)">isNonAmbNucleotideSequence</A></B>(java.lang.String sequence)</CODE>\r
+\r
+<BR>\r
+ Ambiguous DNA chars : AGTCRYMKSWHBVDN // differs from protein in only one
+ (!) - B char</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static boolean</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#isNucleotideSequence(compbio.data.sequence.FastaSequence)">isNucleotideSequence</A></B>(<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A> s)</CODE>\r
+\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static boolean</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#isProteinSequence(java.lang.String)">isProteinSequence</A></B>(java.lang.String sequence)</CODE>\r
+\r
+<BR>\r
+ </TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>></CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#readFasta(java.io.InputStream)">readFasta</A></B>(java.io.InputStream inStream)</CODE>\r
+\r
+<BR>\r
+ Reads fasta sequences from inStream into the list of FastaSequence
+ objects</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static void</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#writeFasta(java.io.OutputStream, java.util.List)">writeFasta</A></B>(java.io.OutputStream os,\r
+ java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> sequences)</CODE>\r
+\r
+<BR>\r
+ Writes FastaSequence in the file, each sequence will take one line only</TD>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
+<CODE>static void</CODE></FONT></TD>\r
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/SequenceUtil.html#writeFasta(java.io.OutputStream, java.util.List, int)">writeFasta</A></B>(java.io.OutputStream outstream,\r
+ java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> sequences,\r
+ int width)</CODE>\r
+\r
+<BR>\r
+ Writes list of FastaSequeces into the outstream formatting the sequence
+ so that it contains width chars on each line</TD>\r
+</TR>\r
+</TABLE>\r
+ <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
+<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
+<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
+<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
+</TR>\r
+<TR BGCOLOR="white" CLASS="TableRowColor">\r
+<TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
+</TR>\r
+</TABLE>\r
+ \r
+<P>\r
+\r
+<!-- ============ FIELD DETAIL =========== -->\r
+\r
+<A NAME="field_detail"><!-- --></A>\r
+<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
+<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
+<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
+<B>Field Detail</B></FONT></TH>\r
+</TR>\r
+</TABLE>\r
+\r
+<A NAME="WHITE_SPACE"><!-- --></A><H3>\r
+WHITE_SPACE</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>WHITE_SPACE</B></PRE>\r
+<DL>\r
+<DD>A whitespace character: [\t\n\x0B\f\r]\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="DIGIT"><!-- --></A><H3>\r
+DIGIT</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>DIGIT</B></PRE>\r
+<DL>\r
+<DD>A digit\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="NONWORD"><!-- --></A><H3>\r
+NONWORD</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>NONWORD</B></PRE>\r
+<DL>\r
+<DD>Non word\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="AA"><!-- --></A><H3>\r
+AA</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>AA</B></PRE>\r
+<DL>\r
+<DD>Valid Amino acids\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="NON_AA"><!-- --></A><H3>\r
+NON_AA</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>NON_AA</B></PRE>\r
+<DL>\r
+<DD>inversion of AA pattern\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="AMBIGUOUS_AA"><!-- --></A><H3>\r
+AMBIGUOUS_AA</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>AMBIGUOUS_AA</B></PRE>\r
+<DL>\r
+<DD>Same as AA pattern but with two additional letters - XU\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="NUCLEOTIDE"><!-- --></A><H3>\r
+NUCLEOTIDE</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>NUCLEOTIDE</B></PRE>\r
+<DL>\r
+<DD>Nucleotides a, t, g, c, u\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="AMBIGUOUS_NUCLEOTIDE"><!-- --></A><H3>\r
+AMBIGUOUS_NUCLEOTIDE</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>AMBIGUOUS_NUCLEOTIDE</B></PRE>\r
+<DL>\r
+<DD>Ambiguous nucleotide\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="NON_NUCLEOTIDE"><!-- --></A><H3>\r
+NON_NUCLEOTIDE</H3>\r
+<PRE>\r
+public static final java.util.regex.Pattern <B>NON_NUCLEOTIDE</B></PRE>\r
+<DL>\r
+<DD>Non nucleotide\r
+<P>\r
+<DL>\r
+</DL>\r
+</DL>\r
+\r
+<!-- ============ METHOD DETAIL ========== -->\r
+\r
+<A NAME="method_detail"><!-- --></A>\r
+<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
+<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
+<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
+<B>Method Detail</B></FONT></TH>\r
+</TR>\r
+</TABLE>\r
+\r
+<A NAME="isNucleotideSequence(compbio.data.sequence.FastaSequence)"><!-- --></A><H3>\r
+isNucleotideSequence</H3>\r
+<PRE>\r
+public static boolean <B>isNucleotideSequence</B>(<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A> s)</PRE>\r
+<DL>\r
+<DD><DL>\r
+\r
+<DT><B>Returns:</B><DD>true is the sequence contains only letters a,c, t, g, u</DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="isNonAmbNucleotideSequence(java.lang.String)"><!-- --></A><H3>\r
+isNonAmbNucleotideSequence</H3>\r
+<PRE>\r
+public static boolean <B>isNonAmbNucleotideSequence</B>(java.lang.String sequence)</PRE>\r
+<DL>\r
+<DD>Ambiguous DNA chars : AGTCRYMKSWHBVDN // differs from protein in only one
+ (!) - B char\r
+<P>\r
+<DD><DL>\r
+</DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="cleanSequence(java.lang.String)"><!-- --></A><H3>\r
+cleanSequence</H3>\r
+<PRE>\r
+public static java.lang.String <B>cleanSequence</B>(java.lang.String sequence)</PRE>\r
+<DL>\r
+<DD>Removes all whitespace chars in the sequence string\r
+<P>\r
+<DD><DL>\r
+<DT><B>Parameters:</B><DD><CODE>sequence</CODE> - \r
+<DT><B>Returns:</B><DD>cleaned up sequence</DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="deepCleanSequence(java.lang.String)"><!-- --></A><H3>\r
+deepCleanSequence</H3>\r
+<PRE>\r
+public static java.lang.String <B>deepCleanSequence</B>(java.lang.String sequence)</PRE>\r
+<DL>\r
+<DD>Removes all special characters and digits as well as whitespace chars
+ from the sequence\r
+<P>\r
+<DD><DL>\r
+<DT><B>Parameters:</B><DD><CODE>sequence</CODE> - \r
+<DT><B>Returns:</B><DD>cleaned up sequence</DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="isProteinSequence(java.lang.String)"><!-- --></A><H3>\r
+isProteinSequence</H3>\r
+<PRE>\r
+public static boolean <B>isProteinSequence</B>(java.lang.String sequence)</PRE>\r
+<DL>\r
+<DD><DL>\r
+<DT><B>Parameters:</B><DD><CODE>sequence</CODE> - \r
+<DT><B>Returns:</B><DD>true is the sequence is a protein sequence, false overwise</DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="isAmbiguosProtein(java.lang.String)"><!-- --></A><H3>\r
+isAmbiguosProtein</H3>\r
+<PRE>\r
+public static boolean <B>isAmbiguosProtein</B>(java.lang.String sequence)</PRE>\r
+<DL>\r
+<DD>Check whether the sequence confirms to amboguous protein sequence\r
+<P>\r
+<DD><DL>\r
+<DT><B>Parameters:</B><DD><CODE>sequence</CODE> - \r
+<DT><B>Returns:</B><DD>return true only if the sequence if ambiguous protein sequence
+ Return false otherwise. e.g. if the sequence is non-ambiguous
+ protein or DNA</DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="writeFasta(java.io.OutputStream, java.util.List, int)"><!-- --></A><H3>\r
+writeFasta</H3>\r
+<PRE>\r
+public static void <B>writeFasta</B>(java.io.OutputStream outstream,\r
+ java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> sequences,\r
+ int width)\r
+ throws java.io.IOException</PRE>\r
+<DL>\r
+<DD>Writes list of FastaSequeces into the outstream formatting the sequence
+ so that it contains width chars on each line\r
+<P>\r
+<DD><DL>\r
+<DT><B>Parameters:</B><DD><CODE>outstream</CODE> - <DD><CODE>sequences</CODE> - <DD><CODE>width</CODE> - - the maximum number of characters to write in one line\r
+<DT><B>Throws:</B>\r
+<DD><CODE>java.io.IOException</CODE></DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="readFasta(java.io.InputStream)"><!-- --></A><H3>\r
+readFasta</H3>\r
+<PRE>\r
+public static java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> <B>readFasta</B>(java.io.InputStream inStream)\r
+ throws java.io.IOException</PRE>\r
+<DL>\r
+<DD>Reads fasta sequences from inStream into the list of FastaSequence
+ objects\r
+<P>\r
+<DD><DL>\r
+<DT><B>Parameters:</B><DD><CODE>inStream</CODE> - from\r
+<DT><B>Returns:</B><DD>list of FastaSequence objects\r
+<DT><B>Throws:</B>\r
+<DD><CODE>java.io.IOException</CODE></DL>\r
+</DD>\r
+</DL>\r
+<HR>\r
+\r
+<A NAME="writeFasta(java.io.OutputStream, java.util.List)"><!-- --></A><H3>\r
+writeFasta</H3>\r
+<PRE>\r
+public static void <B>writeFasta</B>(java.io.OutputStream os,\r
+ java.util.List<<A HREF="../../../compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>> sequences)\r
+ throws java.io.IOException</PRE>\r
+<DL>\r
+<DD>Writes FastaSequence in the file, each sequence will take one line only\r
+<P>\r
+<DD><DL>\r
+<DT><B>Parameters:</B><DD><CODE>os</CODE> - <DD><CODE>sequences</CODE> - \r
+<DT><B>Throws:</B>\r
+<DD><CODE>java.io.IOException</CODE></DL>\r
+</DD>\r
+</DL>\r
+<!-- ========= END OF CLASS DATA ========= -->\r
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