+++ /dev/null
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-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:49 GMT 2010 -->\r
-<TITLE>\r
-RunnerConfigMarshaller\r
-</TITLE>\r
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-<SCRIPT type="text/javascript">\r
-function windowTitle()\r
-{\r
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- parent.document.title="RunnerConfigMarshaller";\r
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-<A NAME="navbar_top_firstrow"><!-- --></A>\r
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-</EM>\r
-</TD>\r
-</TR>\r
-\r
-<TR>\r
-<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
- <A HREF="../../../compbio/engine/conf/PropertyHelperManager.html" title="class in compbio.engine.conf"><B>PREV CLASS</B></A> \r
- NEXT CLASS</FONT></TD>\r
-<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
- <A HREF="../../../index.html?compbio/engine/conf/RunnerConfigMarshaller.html" target="_top"><B>FRAMES</B></A> \r
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- <SCRIPT type="text/javascript">\r
- <!--\r
- if(window==top) {\r
- document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
- }\r
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- <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
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-<TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
- SUMMARY: NESTED | FIELD | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD>\r
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-DETAIL: FIELD | <A HREF="#constructor_detail">CONSTR</A> | <A HREF="#method_detail">METHOD</A></FONT></TD>\r
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-<A NAME="skip-navbar_top"></A>\r
-<!-- ========= END OF TOP NAVBAR ========= -->\r
-\r
-<HR>\r
-<!-- ======== START OF CLASS DATA ======== -->\r
-<H2>\r
-<FONT SIZE="-1">\r
-compbio.engine.conf</FONT>\r
-<BR>\r
-Class RunnerConfigMarshaller<T></H2>\r
-<PRE>\r
-java.lang.Object\r
- <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.engine.conf.RunnerConfigMarshaller<T></B>\r
-</PRE>\r
-<HR>\r
-<DL>\r
-<DT><PRE>public class <B>RunnerConfigMarshaller<T></B><DT>extends java.lang.Object</DL>\r
-</PRE>\r
-\r
-<P>\r
-<HR>\r
-\r
-<P>\r
-\r
-<!-- ======== CONSTRUCTOR SUMMARY ======== -->\r
-\r
-<A NAME="constructor_summary"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Constructor Summary</B></FONT></TH>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#RunnerConfigMarshaller(java.lang.Class)">RunnerConfigMarshaller</A></B>(java.lang.Class<?> rootClass)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#RunnerConfigMarshaller(java.lang.Class, java.lang.Class...)">RunnerConfigMarshaller</A></B>(java.lang.Class<?> rootClass,\r
- java.lang.Class<?>... classes)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-</TABLE>\r
- \r
-<!-- ========== METHOD SUMMARY =========== -->\r
-\r
-<A NAME="method_summary"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
-<B>Method Summary</B></FONT></TH>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static javax.xml.validation.Schema</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#getSchema(java.lang.String)">getSchema</A></B>(java.lang.String schemafile)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static javax.xml.validation.Validator</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#getValidator(javax.xml.validation.Schema)">getValidator</A></B>(javax.xml.validation.Schema schema)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static javax.xml.validation.Validator</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#getValidator(java.lang.String)">getValidator</A></B>(java.lang.String schemafile)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>\r
-<TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
-<TR ALIGN="right" VALIGN="">\r
-<TD NOWRAP><FONT SIZE="-1">\r
-<CODE><V> V</CODE></FONT></TD>\r
-</TR>\r
-</TABLE>\r
-</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#read(java.io.InputStream, java.lang.Class)">read</A></B>(java.io.InputStream instream,\r
- java.lang.Class<V> resultElemType)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>\r
-<TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
-<TR ALIGN="right" VALIGN="">\r
-<TD NOWRAP><FONT SIZE="-1">\r
-<CODE><V> V</CODE></FONT></TD>\r
-</TR>\r
-</TABLE>\r
-</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#read(java.io.InputStream, java.lang.Class, java.lang.Class...)">read</A></B>(java.io.InputStream instream,\r
- java.lang.Class<V> resultElemType,\r
- java.lang.Class<?>... classes)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>\r
-<TABLE BORDER="0" CELLPADDING="0" CELLSPACING="0" SUMMARY="">\r
-<TR ALIGN="right" VALIGN="">\r
-<TD NOWRAP><FONT SIZE="-1">\r
-<CODE><V> V</CODE></FONT></TD>\r
-</TR>\r
-</TABLE>\r
-</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#readAndValidate(java.io.InputStream, java.lang.Class)">readAndValidate</A></B>(java.io.InputStream document,\r
- java.lang.Class<V> resultElemType)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE>static boolean</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#validate(javax.xml.validation.Validator, java.lang.String)">validate</A></B>(javax.xml.validation.Validator validator,\r
- java.lang.String document)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE> void</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#write(java.lang.Object, java.io.OutputStream)">write</A></B>(java.lang.Object xmlRootElement,\r
- java.io.OutputStream out)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
-<CODE> void</CODE></FONT></TD>\r
-<TD><CODE><B><A HREF="../../../compbio/engine/conf/RunnerConfigMarshaller.html#writeAndValidate(java.lang.Object, java.lang.String, java.io.OutputStream)">writeAndValidate</A></B>(java.lang.Object xmlRootElement,\r
- java.lang.String schemafile,\r
- java.io.OutputStream out)</CODE>\r
-\r
-<BR>\r
- </TD>\r
-</TR>\r
-</TABLE>\r
- <A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>\r
-</TR>\r
-<TR BGCOLOR="white" CLASS="TableRowColor">\r
-<TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>\r
-</TR>\r
-</TABLE>\r
- \r
-<P>\r
-\r
-<!-- ========= CONSTRUCTOR DETAIL ======== -->\r
-\r
-<A NAME="constructor_detail"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
-<B>Constructor Detail</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<A NAME="RunnerConfigMarshaller(java.lang.Class)"><!-- --></A><H3>\r
-RunnerConfigMarshaller</H3>\r
-<PRE>\r
-public <B>RunnerConfigMarshaller</B>(java.lang.Class<?> rootClass)\r
- throws javax.xml.bind.JAXBException</PRE>\r
-<DL>\r
-<DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.bind.JAXBException</CODE></DL>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="RunnerConfigMarshaller(java.lang.Class, java.lang.Class...)"><!-- --></A><H3>\r
-RunnerConfigMarshaller</H3>\r
-<PRE>\r
-public <B>RunnerConfigMarshaller</B>(java.lang.Class<?> rootClass,\r
- java.lang.Class<?>... classes)\r
- throws javax.xml.bind.JAXBException</PRE>\r
-<DL>\r
-<DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.bind.JAXBException</CODE></DL>\r
-</DL>\r
-\r
-<!-- ============ METHOD DETAIL ========== -->\r
-\r
-<A NAME="method_detail"><!-- --></A>\r
-<TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
-<TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
-<TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
-<B>Method Detail</B></FONT></TH>\r
-</TR>\r
-</TABLE>\r
-\r
-<A NAME="write(java.lang.Object, java.io.OutputStream)"><!-- --></A><H3>\r
-write</H3>\r
-<PRE>\r
-public void <B>write</B>(java.lang.Object xmlRootElement,\r
- java.io.OutputStream out)\r
- throws javax.xml.bind.JAXBException,\r
- java.io.IOException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.bind.JAXBException</CODE>\r
-<DD><CODE>java.io.IOException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="writeAndValidate(java.lang.Object, java.lang.String, java.io.OutputStream)"><!-- --></A><H3>\r
-writeAndValidate</H3>\r
-<PRE>\r
-public void <B>writeAndValidate</B>(java.lang.Object xmlRootElement,\r
- java.lang.String schemafile,\r
- java.io.OutputStream out)\r
- throws javax.xml.bind.JAXBException,\r
- java.io.IOException,\r
- org.xml.sax.SAXException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.bind.JAXBException</CODE>\r
-<DD><CODE>java.io.IOException</CODE>\r
-<DD><CODE>org.xml.sax.SAXException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="getSchema(java.lang.String)"><!-- --></A><H3>\r
-getSchema</H3>\r
-<PRE>\r
-public static javax.xml.validation.Schema <B>getSchema</B>(java.lang.String schemafile)\r
- throws org.xml.sax.SAXException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>org.xml.sax.SAXException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="getValidator(java.lang.String)"><!-- --></A><H3>\r
-getValidator</H3>\r
-<PRE>\r
-public static javax.xml.validation.Validator <B>getValidator</B>(java.lang.String schemafile)\r
- throws org.xml.sax.SAXException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Returns:</B><DD>\r
-<DT><B>Throws:</B>\r
-<DD><CODE>org.xml.sax.SAXException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="getValidator(javax.xml.validation.Schema)"><!-- --></A><H3>\r
-getValidator</H3>\r
-<PRE>\r
-public static javax.xml.validation.Validator <B>getValidator</B>(javax.xml.validation.Schema schema)\r
- throws org.xml.sax.SAXException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>org.xml.sax.SAXException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="validate(javax.xml.validation.Validator, java.lang.String)"><!-- --></A><H3>\r
-validate</H3>\r
-<PRE>\r
-public static boolean <B>validate</B>(javax.xml.validation.Validator validator,\r
- java.lang.String document)\r
- throws java.io.IOException,\r
- org.xml.sax.SAXException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>java.io.IOException</CODE>\r
-<DD><CODE>org.xml.sax.SAXException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="readAndValidate(java.io.InputStream, java.lang.Class)"><!-- --></A><H3>\r
-readAndValidate</H3>\r
-<PRE>\r
-public <V> V <B>readAndValidate</B>(java.io.InputStream document,\r
- java.lang.Class<V> resultElemType)\r
- throws javax.xml.bind.JAXBException,\r
- java.io.IOException,\r
- org.xml.sax.SAXException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.bind.JAXBException</CODE>\r
-<DD><CODE>java.io.IOException</CODE>\r
-<DD><CODE>org.xml.sax.SAXException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="read(java.io.InputStream, java.lang.Class)"><!-- --></A><H3>\r
-read</H3>\r
-<PRE>\r
-public <V> V <B>read</B>(java.io.InputStream instream,\r
- java.lang.Class<V> resultElemType)\r
- throws javax.xml.bind.JAXBException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.bind.JAXBException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<HR>\r
-\r
-<A NAME="read(java.io.InputStream, java.lang.Class, java.lang.Class...)"><!-- --></A><H3>\r
-read</H3>\r
-<PRE>\r
-public <V> V <B>read</B>(java.io.InputStream instream,\r
- java.lang.Class<V> resultElemType,\r
- java.lang.Class<?>... classes)\r
- throws javax.xml.bind.JAXBException</PRE>\r
-<DL>\r
-<DD><DL>\r
-\r
-<DT><B>Throws:</B>\r
-<DD><CODE>javax.xml.bind.JAXBException</CODE></DL>\r
-</DD>\r
-</DL>\r
-<!-- ========= END OF CLASS DATA ========= -->\r
-<HR>\r
-\r
-\r
-<!-- ======= START OF BOTTOM NAVBAR ====== -->\r
-<A NAME="navbar_bottom"><!-- --></A>\r
-<A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
-<TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
-<TR>\r
-<TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
-<A NAME="navbar_bottom_firstrow"><!-- --></A>\r
-<TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
- <TR ALIGN="center" VALIGN="top">\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A> </TD>\r
- <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> <FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="class-use/RunnerConfigMarshaller.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A> </TD>\r
- <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A> </TD>\r
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-<TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
-</EM>\r
-</TD>\r
-</TR>\r
-\r
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-<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
- <A HREF="../../../compbio/engine/conf/PropertyHelperManager.html" title="class in compbio.engine.conf"><B>PREV CLASS</B></A> \r
- NEXT CLASS</FONT></TD>\r
-<TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
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- <SCRIPT type="text/javascript">\r
- <!--\r
- if(window==top) {\r
- document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
- }\r
- //-->\r
-</SCRIPT>\r
-<NOSCRIPT>\r
- <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
-</NOSCRIPT>\r
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-</FONT></TD>\r
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-<TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
- SUMMARY: NESTED | FIELD | <A HREF="#constructor_summary">CONSTR</A> | <A HREF="#method_summary">METHOD</A></FONT></TD>\r
-<TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
-DETAIL: FIELD | <A HREF="#constructor_detail">CONSTR</A> | <A HREF="#method_detail">METHOD</A></FONT></TD>\r
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-<A NAME="skip-navbar_bottom"></A>\r
-<!-- ======== END OF BOTTOM NAVBAR ======= -->\r
-\r
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