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-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:50 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:42 GMT 2011 -->\r
<TITLE>\r
compbio.runner._impl Class Hierarchy\r
</TITLE>\r
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-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
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<LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
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Class Hierarchy\r
</H2>\r
<UL>\r
-<LI TYPE="circle">java.lang.Object<UL>\r
+<LI TYPE="circle">java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang"><B>Object</B></A><UL>\r
<LI TYPE="circle">compbio.runner.<A HREF="../../../compbio/runner/_SkeletalCommandBuilder.html" title="class in compbio.runner"><B>_SkeletalCommandBuilder</B></A> (implements compbio.engine.client.<A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T>)\r
<UL>\r
-<LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl"><B>BlastAll</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/Disembl.html" title="class in compbio.runner._impl"><B>Disembl</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/Mcl.html" title="class in compbio.runner._impl"><B>Mcl</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/OB.html" title="class in compbio.runner._impl"><B>OB</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/PSIBlast.html" title="class in compbio.runner._impl"><B>PSIBlast</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/Ronn.html" title="class in compbio.runner._impl"><B>Ronn</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/RPSBlast.html" title="class in compbio.runner._impl"><B>RPSBlast</B></A></UL>\r
+<LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl"><B>BlastAll</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/Mcl.html" title="class in compbio.runner._impl"><B>Mcl</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/OB.html" title="class in compbio.runner._impl"><B>OB</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/PSIBlast.html" title="class in compbio.runner._impl"><B>PSIBlast</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/Ronn.html" title="class in compbio.runner._impl"><B>Ronn</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/RPSBlast.html" title="class in compbio.runner._impl"><B>RPSBlast</B></A></UL>\r
<LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl"><B>BlastParameters</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/Environment.html" title="class in compbio.runner._impl"><B>Environment</B></A><LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/NetNglyc.html" title="class in compbio.runner._impl"><B>NetNglyc</B></A> (implements compbio.engine.client.<A HREF="../../../compbio/engine/client/Executable.html" title="interface in compbio.engine.client">Executable</A><T>)\r
<LI TYPE="circle">compbio.runner._impl.<A HREF="../../../compbio/runner/_impl/Runners.html" title="class in compbio.runner._impl"><B>Runners</B></A></UL>\r
</UL>\r