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-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
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<DT><A HREF="../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl"><B>BlastAll</B></A> - Class in <A HREF="../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A><DD> <DT><A HREF="../compbio/runner/_impl/BlastAll.html#BlastAll(java.lang.String)"><B>BlastAll(String)</B></A> - \r
Constructor for class compbio.runner._impl.<A HREF="../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl">BlastAll</A>\r
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-<DT><A HREF="../compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl"><B>BlastParameters</B></A> - Class in <A HREF="../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A><DD>Utility class for common Blast parameters<DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred"><B>BlastParser</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD> <DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html#BlastParser()"><B>BlastParser()</B></A> - \r
+<DT><A HREF="../compbio/pipeline/_jpred/BlastBlastComparator.html" title="class in compbio.pipeline._jpred"><B>BlastBlastComparator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD> <DT><A HREF="../compbio/pipeline/_jpred/BlastBlastComparator.html#BlastBlastComparator()"><B>BlastBlastComparator()</B></A> - \r
+Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/BlastBlastComparator.html" title="class in compbio.pipeline._jpred">BlastBlastComparator</A>\r
+<DD> \r
+<DT><A HREF="../compbio/pipeline/_jpred/BlastHmmerComparator.html" title="class in compbio.pipeline._jpred"><B>BlastHmmerComparator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD> <DT><A HREF="../compbio/pipeline/_jpred/BlastHmmerComparator.html#BlastHmmerComparator()"><B>BlastHmmerComparator()</B></A> - \r
+Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/BlastHmmerComparator.html" title="class in compbio.pipeline._jpred">BlastHmmerComparator</A>\r
+<DD> \r
+<DT><A HREF="../compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl"><B>BlastParameters</B></A> - Class in <A HREF="../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A><DD>Utility class for common Blast parameters<DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred"><B>BlastParser</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD> <DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html#BlastParser(java.lang.String)"><B>BlastParser(String)</B></A> - \r
Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred">BlastParser</A>\r
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