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JWS-109 & JWS-116 Moved the docs (source and html built) to a new location that is...
[jabaws.git] / website / full_javadoc / index-files / index-2.html
diff --git a/website/full_javadoc/index-files/index-2.html b/website/full_javadoc/index-files/index-2.html
index a82cdfb..8f77491 100644 (file)
--- a/website/full_javadoc/index-files/index-2.html
+++ b/website/full_javadoc/index-files/index-2.html
@@ -2,12 +2,12 @@
 <!--NewPage-->\r
 <HTML>\r
 <HEAD>\r
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:50 GMT 2010 -->\r
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:43 GMT 2011 -->\r
 <TITLE>\r
 B-Index\r
 </TITLE>\r
 \r
-<META NAME="date" CONTENT="2010-02-17">\r
+<META NAME="date" CONTENT="2011-12-07">\r
 \r
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../stylesheet.css" TITLE="Style">\r
 \r
@@ -85,7 +85,13 @@ function windowTitle()
 <DT><A HREF="../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl"><B>BlastAll</B></A> - Class in <A HREF="../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A><DD>&nbsp;<DT><A HREF="../compbio/runner/_impl/BlastAll.html#BlastAll(java.lang.String)"><B>BlastAll(String)</B></A> - \r
 Constructor for class compbio.runner._impl.<A HREF="../compbio/runner/_impl/BlastAll.html" title="class in compbio.runner._impl">BlastAll</A>\r
 <DD>&nbsp;\r
-<DT><A HREF="../compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl"><B>BlastParameters</B></A> - Class in <A HREF="../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A><DD>Utility class for common Blast parameters<DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred"><B>BlastParser</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html#BlastParser()"><B>BlastParser()</B></A> - \r
+<DT><A HREF="../compbio/pipeline/_jpred/BlastBlastComparator.html" title="class in compbio.pipeline._jpred"><B>BlastBlastComparator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/pipeline/_jpred/BlastBlastComparator.html#BlastBlastComparator()"><B>BlastBlastComparator()</B></A> - \r
+Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/BlastBlastComparator.html" title="class in compbio.pipeline._jpred">BlastBlastComparator</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/pipeline/_jpred/BlastHmmerComparator.html" title="class in compbio.pipeline._jpred"><B>BlastHmmerComparator</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/pipeline/_jpred/BlastHmmerComparator.html#BlastHmmerComparator()"><B>BlastHmmerComparator()</B></A> - \r
+Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/BlastHmmerComparator.html" title="class in compbio.pipeline._jpred">BlastHmmerComparator</A>\r
+<DD>&nbsp;\r
+<DT><A HREF="../compbio/runner/_impl/BlastParameters.html" title="class in compbio.runner._impl"><B>BlastParameters</B></A> - Class in <A HREF="../compbio/runner/_impl/package-summary.html">compbio.runner._impl</A><DD>Utility class for common Blast parameters<DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred"><B>BlastParser</B></A> - Class in <A HREF="../compbio/pipeline/_jpred/package-summary.html">compbio.pipeline._jpred</A><DD>&nbsp;<DT><A HREF="../compbio/pipeline/_jpred/BlastParser.html#BlastParser(java.lang.String)"><B>BlastParser(String)</B></A> - \r
 Constructor for class compbio.pipeline._jpred.<A HREF="../compbio/pipeline/_jpred/BlastParser.html" title="class in compbio.pipeline._jpred">BlastParser</A>\r
 <DD>&nbsp;\r
 </DL>\r