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<div id="banner">\r
<table> \r
-<tr><td style="width:130px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt.gif" alt="University of Dundee" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws.png" title="JABAWS:MSA" alt="JABAWS:MSA"/></td>\r
-<td class="bg"><img src="images/align.png" alt="Multiple sequence alignment"/></td>\r
+<tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" alt="University of Dundee" width="158" height="90" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>\r
+<td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
</tr>\r
</table>\r
</div>\r
<a href="man_about.html">Manual</a> \r
<a href="download.html">Download</a> \r
<a href="contacts.html">Contact Us</a>\r
+ <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
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<div id="content">\r
-<h2 id="headtitle">JABAWS</h2>\r
-<p style="color:black; font-weight:normal; text-align:left;"><span style="border-bottom:dotted 1px #666" title="JAva Bioinformatics Analysis Web Services for Multiple Sequence Alignment">JABAWS:MSA</span> is free software which provides five web services for multiple sequence alignment: <a href="http://www.clustal.org/">Clustal W</a>, <a href=\r
+<h2 id="headtitle">JABAWS 2</h2>\r
+<p style="color:black; font-weight:normal; text-align:left;"><span style="border-bottom:dotted 1px #666" title="JAva Bioinformatics Analysis Web Services version 2">JABAWS<sup>2.0</sup>:Disorder</span> is free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. Disorder prediction services are based on <a href="http://dis.embl.de/">DisEMBL</a>, <a href="http://iupred.enzim.hu">IUPred</a>, <a href="http://www.strubi.ox.ac.uk/RONN">Ronn</a>, <a href="http://globplot.embl.de/">GlobPlot</a>, conservation is calculated by <a href="http://www.compbio.dundee.ac.uk/aacon">AACon</a>, multiple sequence alignment services are the <a href="http://www.clustal.org/omega">Clustal Omega</a>, <a href="http://www.clustal.org/clustal2">Clustal W</a>, <a href=\r
"http://align.bmr.kyushu-u.ac.jp/mafft/software/">MAFFT</a>, <a href="http://www.drive5.com/muscle">MUSCLE</a>, <a href=\r
-"http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"> TCOFFEE</a> and <a href="http://probcons.stanford.edu/">PROBCONS</a> conveniently packaged to run on your local computer, server or cluster. \r
+"http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"> TCOFFEE</a> and <a href="http://probcons.stanford.edu/">PROBCONS</a>. \r
<span style="color:black; font-weight:normal; text-align:left;">JABA Web Services can be accessed from the <a href="http://www.jalview.org">Jalview</a> multiple sequence alignment editor and analysis workbench to allow multiple alignment calculations limited only by your own local computing resources.</span></p>\r
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<div class="brick_header"><h2>For System Administrators</h2></div>\r
<div class="brick_content">\r
<p><strong>The Server: </strong><a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive</a> (45M) </p>\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive</a> (51M) </p>\r
<p>JABAWS requires a Servlet 2.4 compatible servlet container like Apache-Tomcat to run. Please check the quick start guide for <a href="manual_qs_war.html#qsc">installation instructions</a>.</p>\r
</div>\r
</div></td>\r
<div class="brick_header"><h2>For Bioinformaticians/Developers</h2></div>\r
<div class="brick_content">\r
<strong>The Server: </strong><a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive</a> (45M)\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive</a> (51M)\r
<br/>\r
<strong>The Client: </strong>\r
- Command Line Client <a href="http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client.jar">binary</a> | <a href=\r
-"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-client-source.jar">source</a> \r
+ Command Line Client <a href="http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client-2.0.jar">binary</a> | <a href=\r
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-client-source-2.0.jar">source</a> \r
<!-- <li><a href="http://www.jalview.org/download.html">Jalview</a> (18M)</li> -->\r
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</div>\r
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-<div id="copyright">Last update: 19 May 2011<br />\r
- This site is best viewed in Firefox 3.6, Google Chrome 10 or Internet Explorer 8 </div>\r
+<div id="copyright">Last update: 2 August 2011<br />\r
+ This site is best viewed in Firefox 3.6, Google Chrome 10, Internet Explorer 8 or above </div>\r
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