<a class="newpressed" href="index.html">Home</a> \r
<a class="newa" href="quick_start.html">Getting Started</a> \r
<a class="newa" href="man_about.html">Manual</a> \r
- <a class="newa" href="http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/download">Download</a> \r
+ <a class="newa" href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/download">Download</a> \r
<a class="newa" href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
<a class="newa" href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
<a class="newa" href="contacts.html">Contact Us</a>\r
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<p><span style="color:black; font-weight:normal; text-align:left;">\r
JABAWS 2.1 installation can be accessed from the <strong><a href="http://www.jalview.org">Jalview</a> desktop \r
-application</strong> (version 2.8 onwards) and the <a href="man_client.html">JABAWS command-line client</a>. \r
+application</strong> (version 2.8 onwards) and the <a href="man_client.html">JABAWS command-line client</a>. <br/>\r
JABAWS 2.1 is able to provide multiple alignment and sequence analysis calculations limited only by your own \r
computing resources.<br />\r
</span></p>\r
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<div class="brick_header"><h2>For Users</h2></div>\r
<div class="brick_content">\r
- <strong>The Server: </strong><a href="http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/jabaws-dev/get?id=JABAWS201.pack.tar.gz">JABAWS Virtual Appliance:</a> (440M)\r
+ <strong>The Server: </strong><a href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/jabaws-dev/get?id=JABAWS201.pack.tar.gz">JABAWS Virtual Appliance:</a> (440M)\r
or <a href="man_awscloud.html">JABAWS on Amazon Webservices Cloud</a><br/>\r
<strong>The Main Client: </strong><a href="http://www.jalview.org/download.html">Jalview</a> (18M)\r
<p>To use JABAWS web services on most operating systems, just download and <a href="manual_qs_va.html#qsc">install</a> \r
- the JABAWS Virtual Appliance (VA) or even easier - just start JABAWS machine on the cloud and point Jalview at it!</p>\r
+ the JABAWS Virtual Appliance (VA). <br/>\r
+ Or even easier - just start JABAWS machine on the cloud and point Jalview at it!</p>\r
</div>\r
</div>\r
</td>\r
<div class="brick_header"><h2>For System Administrators</h2></div>\r
<div class="brick_content">\r
<p>\r
- <strong>The Server: </strong><a href="http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/jabaws-dev/get?id=jabaws.war">JABAWS Web \r
+ <strong>The Server: </strong><a href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/jabaws-dev/get?id=jabaws.war">JABAWS Web \r
Application aRchive</a> (55M)\r
</p>\r
<p>JABAWS requires a Servlet 2.4 compatible servlet container like <a href="http://tomcat.apache.org">Apache Tomcat</a>\r
<td><div class="brick">\r
<div class="brick_header"><h2>For Bioinformaticians/Developers</h2></div>\r
<div class="brick_content">\r
-<strong>The Server: </strong><a href="http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/jabaws-dev/get?id=jabaws.war">JABAWS Web Application aRchive</a> (55M)\r
+<strong>The Server: </strong><a href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/jabaws-dev/get?id=jabaws.war">JABAWS Web Application aRchive</a> (55M)\r
<br/>\r
<strong>The Client: </strong>\r
- Command Line Client <a href="http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/jabaws-dev/get?id=min-jaba-client-2.1.jar">binary</a> | <a href=\r
-"http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/jabaws-dev/get?id=jaba-client-src-2.1.jar">source</a> \r
+ Command Line Client <a href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/jabaws-dev/get?id=min-jaba-client-2.1.jar">binary</a> | <a href=\r
+"http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/jabaws-dev/get?id=jaba-client-src-2.1.jar">source</a> \r
\r
<p>\r
You can either use the JABAWS Virtual Appliance or the JABAWS Web Application aRchive (WAR) from your own computer or a lab server. \r
-The WAR version gives greater flexibility but requires a bit more configuration. Alternatively you can just script against our public \r
+The WAR version gives greater flexibility but requires a bit more configuration. Alternatively you can script against our public \r
server (see below) with the command line client or you own script. \r
Check out the <a href="manual_qs_client.html#qsc">quick start guide</a> for further details.</p>\r
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</div>\r
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<h3 style="margin:0;">Public JABAWS Server</h3>\r
-<p> You can access our public JABAWS web services with our <a href="http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/jabaws-dev/get?id=min-jaba-client-2.1.jar">command line client</a>, \r
+<p> You can access our public JABAWS web services with our <a href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/jabaws-dev/get?id=min-jaba-client-2.1.jar">command line client</a>, \r
<a href="http://www.jalview.org/download.html">Jalview</a>, or with your own program. Jalview version 2.8 or later is fully compatible with JABAWS 2.1.\r
The latest versions of Jalview are configured to use public JABAWS server by default.</p>\r
<ul>\r
title="http://www.compbio.dundee.ac.uk/jabaws/ClustalWS?" rel=\r
"nofollow">WSDL List</a></li>\r
</ul>\r
-<p>These web services accept submissions of less than one thousand sequences. Should you find this to be insufficient for your needs, \r
+<p>These web services accept submissions of <strong>less than one thousand sequences</strong>. Should you find this to be insufficient for your needs, \r
or if you are concerned about privacy or on an unreliable network connection, then you can \r
- <a href="http://gjb-www-1.cluster.lifesci.dundee.ac.uk:8086/download">download</a> and run the JABAWS Server on your own hardware.</p>\r
+ <a href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/download">download</a> and run the JABAWS Server on your own hardware.</p>\r
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<a href="http://bioinformatics.oxfordjournals.org/content/early/2011/05/18/bioinformatics.btr304.abstract?keytype=ref&ijkey=gd0DwuYBzFRhe4T">\r
doi: 10.1093/bioinformatics/btr304</a>.</p>\r
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