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-<meta name="Last-modified" content="Mon, 4 Apr 2011 12:00:00 GMT"/>\r
+<meta name="Last-modified" content="Fri, 28 Jun 2013 12:00:00 GMT"/>\r
<title>Java Bioinformatics Analyses Web Services (JABAWS) Server Virtual Appliance Manual</title>\r
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Virtual Appliance. It requires no configuration and is simple to install. If you want to install JABAWS for your \r
lab or institution then download the JABAWS Web Application aRchive. It is slightly more complicated to configure \r
but is very straightforward too. Finally, if you want to script against any version of JABAWS or are interested \r
- in writing your own client, the JABAWS command line client is what you need. </p>\r
+ in writing your own client, the JABAWS command line client is what you need.\r
+</p>\r
+\r
<h3><a name="wjaba" id="wjaba"></a>JABAWS Benefits</h3>\r
<ul>\r
<li>Can be deployed on most operating systems, as a VMware or other compatible Virtual Appliance or a Tomcat Java Web Application.</li>\r
<ul>\r
<li><span style="color:black; font-weight:normal; text-align:left;"><a href="http://www.compbio.dundee.ac.uk/aacon">AACon</a></span> (1.0) </li>\r
</ul>\r
-<h3><a name="jaba2"></a>What is new in JABAWS 2.0.1? </h3>\r
-<p>Compared to JABAWS 1, JABAWS 2.0.1 offers a greater number and diversity of web services, Amazon EC2 integration and improved easy of use. It contains </p>\r
+<h3><a name="jaba2.0.1"/></a>What is new in JABAWS 2.0.1? </h3>\r
+<p>JABAWS Version 2.0.1 includes several minor updates and bug fixes for <a href="#jaba2">JABAWS Version 2</a>. These are listed below:</p>\r
+<ul>\r
+ <li>Disembl returned swapped strings for HOTLOOPS and REM465</li>\r
+ <li>Jronn failed to process jobs with more than 3 sequences</li>\r
+ <li>JABAWS could not deal with FASTA records with '>' symbols in the record identificator</li>\r
+ <li>Change of parameter description for AAcon: parameters have been replaced with options for calculation methods. This allows a user to get several AAcon's conservation scores \r
+ in one call</li>\r
+ <li>JABAW never cleaned up job directories. Now JABAWS deletes the job directory if it exist longer then a period defined in Engine.properties</li>\r
+ <li>Default web security has been incompatible with Tomcat 7.0.31 and newer</li>\r
+ </ul>\r
+ <a name="jaba2"/><strong>JABAWS Version 2 (Released 16th Dec 2011)</strong><p>Compared to JABAWS 1, JABAWS 2 offers a greater number and diversity of web services, Amazon EC2 integration and improved ease of use.</p><p>It contains:</p>\r
<ul><li>updates for all multiple sequence alignment services</li>\r
<li>four new protein disorder prediction services</li>\r
<li>Clustal Omega multiple sequence alignment web service</li>\r
<li>amino acid conservation service</li>\r
<li>web services execution statistics visualization </li>\r
- <li>web services status check from a web page</li>\r
+ <li>web services status check from a web page</li>\r
<li>VirtualBox support was dropped in favour of VMware</li>\r
<li>new WAR package for Mac users</li>\r
<li>Amazon Machine Image (AMI) distributive to enable users to use JABAWS on the EC2 cloud</li>\r
git://source.jalview.org / jabaws.git / blobdiff