Change JABAWS version at the website

[jabaws.git] / website / man_client.html

diff --git a/website/man_client.html b/website/man_client.html
index 955dd2b..bca2118 100644 (file)
--- a/website/man_client.html
+++ b/website/man_client.html
@@ -16,7 +16,7 @@
 <table>\r
   <tr>\r
     <td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" width="158" height="90" alt="University of Dundee" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-    <td class="bg"><img src="images/jabaws201-2.png" width="263" height="60" alt="JABAWS-2.0.01" title="Java Bioinformatics Analysis Web Services version 2.0.1"/></td>\r
+    <td class="bg"><img src="images/jabaws25.png" width="263" height="60" alt="JABAWS-2.1" title="Java Bioinformatics Analysis Web Services version 2.1"/></td>\r
     <td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
   </tr>\r
 </table>\r
@@ -44,6 +44,7 @@
   <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
   <a href="contacts.html">Contact Us</a>\r
   <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
+  <a href="jabaws_funding.html">Funding</a>\r
 </div>\r
 <!-- panel end-->\r
 \r
@@ -87,14 +88,15 @@ Please note that -r and -f options cannot be used together. Alignment is done wi
   --fastaparttree<br />\r
   --retree=10<br />\r
   --op=2.2</span></p>\r
-<p>The format of the file is the same for all JABAWS web services. Parameters are specified in exactly the same way as for native executables - alignment programs like Mafft etc. So parameters which you can use with command line version of an alignment program can be used with JABAWS. Most of the settings controlling alignment process are supported, but the setting controlling output are not. This is due to the fact the output have to be handled by JABAWS, so must remain within its control. For a list of parameters supported by a web service see the next example. In <span class="hightlight">prm.in</span> parameters are separated by the new line, and name of the parameter is separated from its value with an equal sign. This format is constant no matter which JABAWS web service is used. <br />\r
+<p>The format of the file is the same for all JABAWS web services. Parameters are specified in exactly the same way as for native executables - alignment programs like Mafft etc. So parameters which you can use with command line version of an alignment program can be used with JABAWS. Most of the settings controlling alignment process are supported, but because any output has to be handled by JABAWS, settings controlling output are not allowed to be changed. For a list of parameters supported by a web service see the next example. In <span class="hightlight">prm.in</span> parameters are separated by the new line, and name of the parameter is separated from its value with an equals sign. This format is constant no matter which JABAWS web service is used. <br />\r
     <span class="code"> java -jar jabaws-min-client.jar -h=http://myhost.compbio.ac.uk:8080/jabaws -s=MafftWS -parameters</span></p>\r
 <p>The same client can be used to access JABAWS on different hosts. Just point the client to the host you want to use by changing the value of -h key. For example you used <span class="hightlight">-h=http://myhost.compbio.ac.uk:8080/jabaws</span> server, now you want to use another server to <span class="hightlight">-h=http://mylabserver.myuni.edu.</span> This comes handy if your favorite server is off and you need to do the job yesterday. </p>\r
 </div><!-- content end-->\r
-<div id="copyright">Last update: 28 June 2013<br/>Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
+<div id="copyright">Last update: 28 June 2013<br/>Sasha Sherstnev, Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
 </div><!-- wrapper end-->\r
 </div><!-- page end-->\r
 \r
+\r
 <!-- Google analitics -->\r
 <script type="text/javascript">\r
 var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");\r
@@ -108,4 +110,3 @@ pageTracker._trackPageview();
 </script>\r
 </body>\r
 </html>\r
-\r