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<title>Java Bioinformatics Analyses Web Services (JABAWS) Command Line Client manual</title>\r
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<h2><a name="usingcclient" id="usingcclient"></a>JABAWS Command Line Client Usage </h2>\r
<p>The command line client comes as a part of <a href="download.html"> client package</a> which you are welcome to download. The command line client can be used to align sequences using any of JABAWS supported web services. The client is OS independent and supports most of the functions which can be accessed programmatically via <a href="dm_javadoc/index.html">JABAWS API</a>. Using this client you could align sequences using presets or custom parameters, please see examples of this below. Here is the list of options supported by the command line client. </p>\r
-<span class="code"><strong>Usage:</strong> java -jar <path_to_jar_file> -h=host_and_context -s=serviceName ACTION [OPTIONS]\r
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-<div id="copyright">Last update: 7 January 2011<br />\r
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Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of\r
Dundee, UK</div>\r
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