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+\r
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-<meta name="Last-modified" content="Mon, 4 Apr 2011 12:00:00 GMT"/>\r
+<meta name="Last-modified" content="Fri, 28 Jun 2013 12:00:00 GMT"/>\r
<title>Java Bioinformatics Analyses Web Services (JABAWS) manual - getting started</title>\r
-<link href="ws.css" rel="stylesheet" type="text/css" media="screen, projection, handheld, tv" />\r
-<link rel="stylesheet" type="text/css" media="print" href="print.css"/>\r
-\r
+<link href="ws.css" rel="stylesheet" type="text/css" media="screen, projection, handheld, tv" />\r
+<link href="print.css" rel="stylesheet" type="text/css" media="print" />\r
+<link href='http://fonts.googleapis.com/css?family=Yanone+Kaffeesatz:700' rel='stylesheet' type='text/css' />\r
<script type="text/javascript" src="prototype-1.6.0.3.js"></script>\r
</head>\r
+\r
<body>\r
<div id="page">\r
+\r
<div id="banner">\r
-<table> \r
+<table>\r
<tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif" alt="University of Dundee" width="158" height="90" class="logo" title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>\r
-<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0" title="Java Bioinformatics Analysis Web Services version 2.0"/></td>\r
+<td class="bg"><img src="images/jabaws21.png" width="256" height="67" alt="JABAWS-2.1" title="Java Bioinformatics Analysis Web Services version 2.1"/></td>\r
<td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>\r
</tr>\r
</table>\r
</div><!-- banner end-->\r
+\r
<div id="wrapper">\r
<div id="panel">\r
-<a href="index.html">Home</a>\r
- <a class="selected" href="quick_start.html">Getting Started</a> \r
- <a href="man_about.html">Manual</a> \r
- <a href="http://www.compbio.dundee.ac.uk/downloads/jabaws">Download</a>\r
- <a href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
- <a href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
- <a href="contacts.html">Contact Us</a>\r
- <a href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a></div>\r
+ <a class="newa" href="index.html">Home</a> \r
+ <a class="newpressed" href="quick_start.html">Getting Started</a> \r
+ <a class="newa" href="man_about.html">Manual</a> \r
+ <a class="newa" href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/download">Download</a> \r
+ <a class="newa" href="PublicAnnualStat" title="JABAWS server usage statistics">Usage Statistics</a>\r
+ <a class="newa" href="ServiceStatus" title="JABAWS webservices status. Click to test all web services. Please be patient while the services are being checked">Services Status</a>\r
+ <a class="newa" href="contacts.html">Contact Us</a>\r
+ <a class="newa" href="http://www.compbio.dundee.ac.uk" title="University of Dundee, The Barton Group" >Barton Group</a>\r
+ <a class="newa" href="jabaws_funding.html">Funding</a>\r
+</div>\r
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-<div id="content">\r
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+<div id="content">\r
<h2 id="headtitle">Getting Started</h2>\r
-\r
<h3><a name="whichjaba" id="whichjaba"></a>Choose a JABAWS distribution</h3>\r
-\r
<table id="choicematrix">\r
<tr>\r
<th>I want to use JABAWS for...</th>\r
<th>Quick Guide</th>\r
</tr>\r
<tr>\r
- <td>Running Muptiple Sequence Alignments through Jalview on my <strong>own</strong> computer</td>\r
- <td><a href="manual_qs_va.html#qsc">JABAWS Virtual Appliance (VA)</a></td>\r
+ <td>Running Muptiple Sequence Alignments through Jalview on my <strong>own</strong> computer</td>\r
+ <td><a href="manual_qs_va.html#qsc">JABAWS Virtual Appliance (VA)</a></td>\r
</tr>\r
<tr>\r
<td>Running JABAWS on the <strong>cloud</strong>, for one or many users</td>\r
- <td><a href="man_awscloud.html">JABAWS on the Amazon cloud </a></td>\r
+ <td><a href="manual_qs_amazon.html#qsc">JABAWS on the Amazon cloud </a></td>\r
</tr>\r
<tr>\r
- <td>Running JABAWS for my group, lab, or organization on the <strong>local</strong> infrastructure </td>\r
- <td><a href="manual_qs_war.html#qsc">JABAWS Web Application aRchive (WAR)</a></td>\r
+ <td>Running JABAWS for my group, lab, or organization on the <strong>local</strong> infrastructure </td>\r
+ <td><a href="manual_qs_war.html#qsc">JABAWS Web Application aRchive (WAR)</a></td>\r
</tr>\r
<tr>\r
- <td>Accessing a JABAWS server from my own code</td>\r
- <td><a href="manual_qs_client.html#qsc">JABAWS Java Client</a></td>\r
+ <td>Accessing a JABAWS server from my own code</td>\r
+ <td><a href="manual_qs_client.html#qsc">JABAWS Java Client</a></td>\r
</tr>\r
</table>\r
\r
<a name="qsc"/>\r
<h3>Running JABAWS on your local machine</h3>\r
-<ul> <li>Download <a href="http://www.compbio.dundee.ac.uk/downloads/jabaws/get?id=jabaws-vm.zip">JABAWS Virtual Appliance</a> (520M) </li>\r
+<ul><li>Download <a href="http://gjb-www-4.cluster.lifesci.dundee.ac.uk:8091/download">JABAWS Virtual Appliance</a></li>\r
</ul>\r
-<p>The Virtual Appliance (VA) package allows you to run a JABAWS server installed on TurnKey Linux as a virtual machine on your laptop or desktop computer. A <a href="man_servervm.html#whenvm">complete guide to the JABAWS VA</a> is given in the manual, but for the impatient, a brief instructions are given below:\r
-\r
+<p>\r
+The Virtual Appliance (VA) package allows you to run a JABAWS server installed on TurnKey Linux as a \r
+virtual machine on your laptop or desktop computer. A <a href="man_servervm.html#whenvm">complete guide \r
+to the JABAWS VA</a> is given in the manual, but for the impatient, a brief instructions are given below:\r
+</p>\r
<p>If you work on Windows, Linux or Unix </p>\r
<ol>\r
<li>download and install <a href="http://www.vmware.com/products/player">VMWare Player</a>.</li>\r
<li>Open the Jalview desktop's preferences panel (from the Tools->Preferences menu option), select the <span class="hightlight">Webservices</span> panel and press the <span class="hightlight">New Service URL</span> button.</li>\r
<li>Enter the JABAWS URL for your new server. This is shown once the appliance is booted up.</li>\r
</ol>\r
-</div> \r
</div>\r
-<!-- about end-->\r
-</div>\r
-<!-- content end--> \r
-<div id="copyright">Last update: 16 September 2011<br/>\r
-Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
+</div><!-- content end--> \r
+<div id="copyright">Last update: 30 April 2014<br/>Sasha Sherstnev, Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of Dundee, UK</div>\r
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git://source.jalview.org / jabaws.git / blobdiff