Adding latest test results

[jabaws.git] / website / tests / Ant suite / classes.html

diff --git a/website/tests/Ant suite/classes.html b/website/tests/Ant suite/classes.html
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+<table border='1'>
+<tr>
+<th>Class name</th>
+<th>Method name</th>
+<th>Groups</th>
+</tr><tr>
+<td>compbio.engine.client.CommandBuilderTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptionsToCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSpaceDelimiterExecutable</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCommandBuilding</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner._impl.NetNglycTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testBuildCommand</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.EngineConfiguratorTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetAsyncEngine</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetSyncEngine</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.disorder.GlobPlotTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnCluster</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsync</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.stat.collector.ExecutionStatCollectorTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testHasCompleted</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testHasTimedOut</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCollectStat</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testUpdateStatTester</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.local.AsyncLocalRunnerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCancelLocally</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testMultipleCancelLocally</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testAsyncCancelOperation</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testAsyncRetrievOperation</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSubmitLocally</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCancelCompletedTaskLocally</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetStatus</td>
+<td>engine </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.MafftTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testExecute</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsyncCheckStatusShortPoolingTime</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testClusterExecute</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSetInputTester</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsyncCheckStatusLongPoolingTime</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.data.sequence.ClustalAlignmentUtilTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadClustalFile</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadClustalFileLongNames</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadClustalFileShortNames</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.disorder.IUPredTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnCluster</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadResults</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsync</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSetParameter</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocallyWithParams</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.client.PathValidatorTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testIsAbsolutePath</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetClassPath</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.stat.collector.StatDBTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadOneMonthData</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testVerifyJobsCount</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadYearData</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetEarliestRecord</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.stat.servlet.util.StatCollectionTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetStats</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSubmit</td>
+<td>engine cluster </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCancel</td>
+<td>engine cluster </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetJobStatus</td>
+<td>engine cluster </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.cluster.drmaa.DrmaaClusterEngineTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSubmit</td>
+<td>engine cluster </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCancel</td>
+<td>engine cluster </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.conservation.AAConTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnCluster</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocallyWithPreset</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsync</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocallyOnTwoCpu</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner._impl.RPSBlastTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testBuildCommand</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestArgsCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.PulledFileCacheTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>test</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.disorder.DisemblTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnCluster</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsync</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner._impl.MclTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testBuildCommand</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.cluster.dundee._QueueTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testQueue</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.LoadBalancerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testLoadBalance</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.ProbconsParametersTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMaxValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersRandomValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMinValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testArguments</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptions</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testDefaultParameters</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testParameters</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.metadata.RunnerConfigTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testValidateUpperBoundaryConstrainCheck</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptionSetInvalidValue</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testValidateBoundaryConstrainCheck</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testValidateValueConstrain</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCreateParameterWithValidValueConstrain</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testValidateLowerBoundaryConstrainCheck</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptionNoDefaultValidate</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCreateParameter</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptionToCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testParameterToCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCreateNumParameterWithoutValidValue</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testValidate</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.disorder.JronnTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnCluster</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsync</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocallyOnTwoCpu</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.MafftParametersTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMaxValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersRandomValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMinValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testArguments</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptions</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testDefaultParameters</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testParameters</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPresets</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner._impl.RonnTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testBuildCommand</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.ProbconsTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testExecute</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testClusterExecute</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSetInputTester</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.conf.PropertyHelperManagerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testClusterEngineConf</td>
+<td>cluster </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>validateClustalConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>validateTcoffeeConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>validateMuscleConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>validateMafftConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testLoadResources</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.metadata.OptionCombinatorTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testgetAllParameters</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testgetAllOptions</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.FilePullerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGet</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCache</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetDelay</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPull</td>
+<td>engine </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.MuscleTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnCluster</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnClusterAsync</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.TcoffeeTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testExecute</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testNcore</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testClusterExecute</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>init</td>
+<td>cluster runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner._impl.OBTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testBuildCommand</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestArgsCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.LimitTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testLimitExceeded</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testLoadLimits</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.local.LocalRunnerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCancelLocally</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testMultipleCancelLocally</td>
+<td>engine </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCancelCompletedTaskLocally</td>
+<td>engine </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner._impl.Tmhmm2Tester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testBuildCommand</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetTestCommand</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.MuscleParametersTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMaxValues</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersRandomValues</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMinValues</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testArguments</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptions</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testDefaultParameters</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testParameters</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPresets</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.data.sequence.FastaSequenceGeneratorTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testProteinSequenceGeneration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.cluster.drmaa.ClusterSessionTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testTaskList</td>
+<td>engine cluster </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.data.sequence.FastaReaderTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>test</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.data.sequence.FastaSequenceTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetFormattedFasta</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.data.sequence.SequenceUtilTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadIUPredForGlobDomain</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testDeepCleanSequence</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadIUPredForShortAndLongDisorder</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCleanProteinSequence</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadWriteFasta</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadAAConResults</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadGlobPlotResults</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testReadDisemblResults</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>loadJronnFile</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testisNonAmbNucleotideSequence</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testisProteinSequence</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testCleanSequence</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.TcoffeeParametersTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMaxValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersRandomValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMinValues</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testArguments</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptions</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testDefaultParameters</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testParameters</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPresets</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>runner non_windows </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.cluster.drmaa.UtilTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testParser</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.ClustalWTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunOnCluster</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testAddParameters</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPersistance</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptionsLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatisticsClusterExecution</td>
+<td>cluster runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunWithMatrix</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfigurationLoading</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>readStatistics</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testRunLocally</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.conf.DirectoryManagerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testGetDirectory</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testNanoTime</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.metadata.PresetTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPresetWithMuptiOptions</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>marshallPreset</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>validatePresets</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.metadata.OptionMarshallerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testUnMarshalling</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testMarshalling</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.runner.msa.ClustalWParametersTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMaxValues</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersRandomValues</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConstrainedParametersMinValues</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testArguments</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testOptions</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testDefaultParameters</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testParameters</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testPresets</td>
+<td>runner </td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testConfiguration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>runner </td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+<tr>
+<td>compbio.engine.conf.RunnerConfigMarshallerTester</td>
+<td>&nbsp;</td><td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@Test</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>testValidationOnMarshalling</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testUnMarshalling</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testValidation</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testSchemaFromCodeGeneration</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td>&nbsp;</td>
+<td>testMarshalling</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@BeforeClass</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@BeforeMethod</td>
+</tr>
+<tr>
+<td>&nbsp;</td>
+<td>setup</td>
+<td>&nbsp;</td></tr>
+<tr>
+<td align='center' colspan='3'>@AfterMethod</td>
+</tr>
+<tr>
+<td align='center' colspan='3'>@AfterClass</td>
+</tr>
+</table>