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Remove old test from web site to replace with most recent
[jabaws.git] / website / tests / clustengine / compbio.runner.clustal.ClustalWParametersTester.html
diff --git a/website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.html b/website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.html
deleted file mode 100644 (file)
index 1b2d8f5..0000000
--- a/website/tests/clustengine/compbio.runner.clustal.ClustalWParametersTester.html
+++ /dev/null
@@ -1,406 +0,0 @@
-<html>
-<head>
-<title>TestNG:  compbio.runner.clustal.ClustalWParametersTester</title>
-<link href="../testng.css" rel="stylesheet" type="text/css" />
-<link href="../my-testng.css" rel="stylesheet" type="text/css" />
-
-<style type="text/css">
-.log { display: none;} 
-.stack-trace { display: none;} 
-</style>
-<script type="text/javascript">
-<!--
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-    e.style.display = 'block';
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-      }
-    }
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-}
-
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-</script>
-
-</head>
-<body>
-<h2 align='center'>compbio.runner.clustal.ClustalWParametersTester</h2><table border='1' align="center">
-<tr>
-<td>Tests passed/Failed/Skipped:</td><td>0/8/0</td>
-</tr><tr>
-<td>Started on:</td><td>Mon Dec 21 18:09:47 GMT 2009</td>
-</tr>
-<tr><td>Total time:</td><td>2 seconds (2219 ms)</td>
-</tr><tr>
-<td>Included groups:</td><td></td>
-</tr><tr>
-<td>Excluded groups:</td><td></td>
-</tr>
-</table><p/>
-<small><i>(Hover the method name to see the test class name)</i></small><p/>
-<table width='100%' border='1' class='invocation-failed'>
-<tr><td colspan='3' align='center'><b>FAILED TESTS</b></td></tr>
-<tr><td><b>Test method</b></td>
-<td width="10%"><b>Time (seconds)</b></td>
-<td width="30%"><b>Exception</b></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testArguments()'>testArguments</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace24166053", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace24166053'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979987799825706 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testArguments(ClustalWParametersTester.java:137)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues()'>testConstrainedParametersMaxValues</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace30308427", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace30308427'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#42979988961908025 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMaxValues(ClustalWParametersTester.java:151)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues()'>testConstrainedParametersMinValues</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace9949215", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace9949215'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#70979988327544395 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:174)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersMinValues(ClustalWParametersTester.java:144)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues()'>testConstrainedParametersRandomValues</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace25934938", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace25934938'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#46979989070571443 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testConstrainedParametersRandomValues(ClustalWParametersTester.java:164)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters()'>testDefaultParameters</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace11854491", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace11854491'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#38979988048124217 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testDefaultParameters(ClustalWParametersTester.java:105)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testOptions()'>testOptions</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26460367", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace26460367'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979988189879815 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testOptions(ClustalWParametersTester.java:122)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testParameters()'>testParameters</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace3932167", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace3932167'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#74979987926880363 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.test(ClustalWParametersTester.java:183)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testParameters(ClustalWParametersTester.java:129)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-<tr>
-<td title='compbio.runner.clustal.ClustalWParametersTester.testPresets()'>testPresets</td>
-<td>0</td>
-<td><div><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)\r
-... Removed 22 stack frames</pre></div><a href='#' onClick='toggleBox("stack-trace26156414", this, "Click to show all stack frames", "Click to hide stack frames")'>Click to show all stack frames</a>
-<div class='stack-trace' id='stack-trace26156414'><pre>java.lang.IllegalArgumentException: Working directory: /homes/pvtroshin/workspace/clustengine/testoutput/local\ClustalW#85979987545393788 is inaccessible or does not exist!\r
-       at compbio.engine.PathValidator.validateDirectory(PathValidator.java:73)\r
-       at compbio.engine.local.ExecutableWrapper.&lt;init&gt;(ExecutableWrapper.java:57)\r
-       at compbio.engine.local.LocalRunner.executeJob(LocalRunner.java:69)\r
-       at compbio.runner.clustal.ClustalWParametersTester.singleTest(ClustalWParametersTester.java:202)\r
-       at compbio.runner.clustal.ClustalWParametersTester.testPresets(ClustalWParametersTester.java:231)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)\r
-       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)\r
-       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)\r
-       at java.lang.reflect.Method.invoke(Method.java:597)\r
-       at org.testng.internal.MethodHelper.invokeMethod(MethodHelper.java:607)\r
-       at org.testng.internal.Invoker.invokeMethod(Invoker.java:517)\r
-       at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:669)\r
-       at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:956)\r
-       at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:126)\r
-       at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:110)\r
-       at org.testng.TestRunner.runWorkers(TestRunner.java:759)\r
-       at org.testng.TestRunner.privateRun(TestRunner.java:592)\r
-       at org.testng.TestRunner.run(TestRunner.java:486)\r
-       at org.testng.SuiteRunner.runTest(SuiteRunner.java:332)\r
-       at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:327)\r
-       at org.testng.SuiteRunner.privateRun(SuiteRunner.java:299)\r
-       at org.testng.SuiteRunner.run(SuiteRunner.java:204)\r
-       at org.testng.TestNG.createAndRunSuiteRunners(TestNG.java:877)\r
-       at org.testng.TestNG.runSuitesLocally(TestNG.java:842)\r
-       at org.testng.TestNG.run(TestNG.java:751)\r
-       at org.testng.remote.RemoteTestNG.run(RemoteTestNG.java:73)\r
-       at org.testng.remote.RemoteTestNG.main(RemoteTestNG.java:124)\r
-</pre></div></td>
-</tr>
-</table><p>
-</body>
-</html>
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